Os03g0246000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0246000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.07 | 0.594 | 4.27 | 1.01 | 0.608 | 1.32 | 0.391 | 0.196 | -0.426 | 9.97 | 22.5 | 1668 | -- | -- |
| 157.65 | 0.585 | 4.27 | 1.14 | 0.544 | 1.39 | 0.378 | -- | -0.409 | 10.1 | 22.12 | 1948 | -- | -- |
| 157.54 | 0.585 | 4.26 | 1.06 | 0.546 | 1.41 | -- | 0.379 | -0.413 | 10.4 | 22.1 | 1975 | -- | -- |
| 157.92 | 0.585 | 4.26 | 1.19 | 0.536 | 1.42 | -- | -- | -0.391 | 10.3 | 22.1 | 1975 | -- | -- |
| 163.88 | 0.596 | 4.26 | 0.895 | -- | 1.37 | -- | 0.702 | -0.351 | -- | 22.4 | 857 | -- | -- |
| 229.36 | 0.71 | 4.37 | 0.596 | 0.611 | -- | 0.281 | -- | -0.876 | 10.1 | -- | -- | -- | -- |
| 229.66 | 0.71 | 4.37 | 0.608 | 0.608 | -- | -- | -- | -0.875 | 10.2 | -- | -- | -- | -- |
| 161.53 | 0.592 | 4.28 | 1.06 | -- | 1.4 | -- | -- | -0.406 | -- | 22.21 | 824 | -- | -- |
| 189.67 | 0.641 | 4.3 | -- | 0.559 | 1.1 | -- | -- | -0.592 | 9.8 | 22.3 | 1917 | -- | -- |
| 252.12 | 0.742 | 4.39 | 0.599 | -- | -- | -- | -- | -0.876 | -- | -- | -- | -- | -- |
| 239.4 | 0.724 | 4.39 | -- | 0.606 | -- | -- | -- | -0.943 | 10.1 | -- | -- | -- | -- |
| 188.98 | 0.64 | 4.32 | -- | -- | 1.19 | -- | -- | -0.575 | -- | 22.33 | 801 | -- | -- |
| 261.59 | 0.755 | 4.4 | -- | -- | -- | -- | -- | -0.943 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 3 | 154.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 13 | 155.85 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 16 | 156.12 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 17 | 156.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 27 | 157.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 30 | 157.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 57 | 157.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 59 | 157.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 127 | 159.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 152 | 159.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 212 | 160.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 271 | 161.80 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 282 | 161.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 294 | 162.26 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 295 | 162.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 316 | 162.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 425 | 164.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 467 | 165.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 489 | 165.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 506 | 165.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 591 | 166.17 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 593 | 166.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 679 | 166.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 707 | 166.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 745 | 167.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 13 |