Os03g0243600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acyl-coA-binding protein, ACBP family protein.
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Os03g0243600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acyl-coA-binding protein, ACBP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.53 | 0.334 | 11.8 | -0.204 | 1.8 | -0.0842 | -0.265 | 2.49 | 0.0478 | 1.87 | 9.99 | 611 | -- | -- |
| 57.23 | 0.355 | 11.9 | -0.205 | 1.57 | 0.197 | 0.768 | -- | 0.0387 | 2.04 | 9.99 | 611 | -- | -- |
| 50.65 | 0.331 | 11.8 | -0.204 | 1.8 | -0.0838 | -- | 2.39 | 0.0479 | 1.87 | 10 | 649 | -- | -- |
| 59.46 | 0.362 | 11.9 | -0.227 | 1.57 | 0.19 | -- | -- | 0.0349 | 1.99 | 10 | 649 | -- | -- |
| 65.23 | 0.376 | 11.9 | -0.428 | -- | 1.52 | -- | 1.08 | 0.0881 | -- | 1.28 | 253 | -- | -- |
| 58.51 | 0.359 | 11.9 | -0.19 | 1.75 | -- | 0.745 | -- | 0.0516 | 1.81 | -- | -- | -- | -- |
| 60.67 | 0.365 | 11.9 | -0.213 | 1.75 | -- | -- | -- | 0.0475 | 1.78 | -- | -- | -- | -- |
| 60.66 | 0.363 | 11.8 | -0.121 | -- | 1.43 | -- | -- | 0.103 | -- | 1.659 | 238 | -- | -- |
| 60.22 | 0.361 | 11.9 | -- | 1.65 | 0.333 | -- | -- | 0.059 | 1.63 | 30.14 | 331 | -- | -- |
| 246.56 | 0.734 | 11.8 | -0.141 | -- | -- | -- | -- | 0.0872 | -- | -- | -- | -- | -- |
| 61.86 | 0.368 | 11.9 | -- | 1.75 | -- | -- | -- | 0.0712 | 1.78 | -- | -- | -- | -- |
| 61.06 | 0.364 | 11.8 | -- | -- | 1.44 | -- | -- | 0.119 | -- | 1.66 | 238 | -- | -- |
| 247.09 | 0.734 | 11.8 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.30 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 12 |
| 3 | 48.68 | radiation | 10 | 720 | < th | dose independent | sin | 3 | NA |
| 10 | 49.14 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 21 |
| 22 | 49.45 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 1 |
| 24 | 49.48 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 45 | 49.97 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 48 | 50.01 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 53 | 50.11 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 5 |
| 68 | 50.24 | radiation | 10 | 720 | < th | dose dependent | sin | 2 | NA |
| 110 | 50.37 | radiation | 10 | 720 | < th | dose independent | rect. | 5 | 3 |
| 131 | 50.41 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 171 | 50.46 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 11 |
| 183 | 50.48 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 9 | NA |
| 213 | 50.51 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 222 | 50.51 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 9 |
| 290 | 50.59 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 9 | NA |
| 391 | 50.68 | radiation | 10 | 720 | < th | dose independent | rect. | 20 | 23 |
| 499 | 50.79 | radiation | 1 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 536 | 50.83 | radiation | 30 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 547 | 50.84 | radiation | 10 | 720 | < th | dose independent | no | NA | NA |
| 558 | 50.85 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 566 | 50.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 618 | 50.90 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 647 | 50.91 | atmosphere | 1010 | 14400 | > th | dose independent | no | NA | NA |
| 659 | 50.91 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 669 | 50.92 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 673 | 50.92 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 705 | 50.94 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 726 | 50.95 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 728 | 50.95 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 729 | 50.95 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 742 | 50.96 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 791 | 50.98 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 796 | 50.99 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 810 | 50.99 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 911 | 51.08 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 922 | 51.08 | radiation | 10 | 720 | < th | dose independent | rect. | 9 | 23 |
| 923 | 51.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 10 |
| 945 | 51.10 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 973 | 51.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 988 | 51.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 14 |