Os03g0242300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0242300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.89 | 0.499 | 12.7 | 0.536 | 1.13 | 2.44 | -0.116 | 2.35 | -0.184 | 10.4 | 24.9 | 1499 | -- | -- |
| 118.12 | 0.506 | 12.6 | 0.995 | 1.03 | 2.06 | -0.108 | -- | -0.0803 | 10.7 | 25.52 | 1955 | -- | -- |
| 112.94 | 0.495 | 12.7 | 0.531 | 1.13 | 2.44 | -- | 2.35 | -0.184 | 10.4 | 24.9 | 1502 | -- | -- |
| 118.17 | 0.506 | 12.6 | 0.991 | 1.04 | 2.05 | -- | -- | -0.0797 | 10.7 | 25.51 | 1955 | -- | -- |
| 169.42 | 0.606 | 12.7 | 0.722 | -- | 2.32 | -- | 1.74 | -0.0845 | -- | 26.4 | 2263 | -- | -- |
| 183.82 | 0.636 | 12.7 | 0.278 | 1.14 | -- | -0.0743 | -- | -0.561 | 10.6 | -- | -- | -- | -- |
| 183.84 | 0.635 | 12.7 | 0.275 | 1.14 | -- | -- | -- | -0.561 | 10.6 | -- | -- | -- | -- |
| 153.55 | 0.577 | 12.6 | 0.998 | -- | 2.64 | -- | -- | -0.0682 | -- | 30.77 | 824 | -- | -- |
| 138.96 | 0.549 | 12.6 | -- | 1.1 | 1.64 | -- | -- | -0.261 | 10.7 | 25.99 | 1690 | -- | -- |
| 263.8 | 0.759 | 12.7 | 0.254 | -- | -- | -- | -- | -0.567 | -- | -- | -- | -- | -- |
| 185.84 | 0.638 | 12.7 | -- | 1.14 | -- | -- | -- | -0.592 | 10.6 | -- | -- | -- | -- |
| 175.53 | 0.617 | 12.7 | -- | -- | 2.23 | -- | -- | -0.269 | -- | 31.4 | 792 | -- | -- |
| 265.5 | 0.761 | 12.8 | -- | -- | -- | -- | -- | -0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 107.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 3 | 108.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 11 | 108.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 28 | 109.22 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 47 | 109.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 61 | 109.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 62 | 110.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 81 | 110.25 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 252 | 111.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 270 | 112.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 400 | 113.12 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 413 | 113.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 480 | 113.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 652 | 115.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 695 | 115.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 14 |
| 726 | 115.68 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 746 | 115.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 758 | 115.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 769 | 115.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 786 | 116.03 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 838 | 116.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 856 | 116.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 967 | 116.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |