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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0242100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Checkpoint protein Rad24 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.03 (0.0262) R2 : 0.711
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.965 (0.0668) R2dC : 0.148 R2C : 0.313
β3 : 2.16 (0.0931) R2dE : 0.398 R2E : 0.561
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0787 (0.0552) R2dN8 : 0.00141 R2N8 : -0.000172
σ : 0.492
deviance : 111.75
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_____
C
peak time of C : 13
E
wheather : temperature
threshold : 9.107
memory length : 183
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.95
open length of G : 19.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
98.64 0.467 7.04 0.515 0.975 1.95 -0.251 -1.75 -0.0416 13.5 10.08 125 7.52 19.3
101.05 0.468 7.02 0.641 1.04 1.89 -0.644 -- 0.0228 13.8 8.736 113 7.55 19.8
98.52 0.462 7.04 0.555 0.957 1.99 -- -1.84 -0.0175 13.2 8.902 138 7.46 19.1
102.17 0.471 7.02 0.654 0.986 2.07 -- -- 0.032 13.1 7.674 179 7.03 19.5
127.8 0.527 7.05 0.441 -- 2.49 -- -0.852 -0.148 -- 12.11 46 7.67 17.9
151.1 0.576 7.02 0.895 1.97 -- -0.669 -- 0.104 15.5 -- -- -- --
152.49 0.578 7.02 0.883 1.97 -- -- -- 0.1 15.5 -- -- -- --
128.87 0.529 7.05 0.493 -- 2.49 -- -- -0.0874 -- 13.63 33 7.78 17.9
111.75 0.492 7.03 -- 0.965 2.16 -- -- -0.0787 13 9.107 183 6.95 19.6
369.27 0.898 7.02 0.8 -- -- -- -- 0.0482 -- -- -- -- --
173.05 0.615 7.04 -- 1.95 -- -- -- 0.00198 15.5 -- -- -- --
134.34 0.54 7.07 -- -- 2.56 -- -- -0.16 -- 14.5 28 7.85 17.9
386.17 0.917 7.04 -- -- -- -- -- -0.0406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.86 temperature 10.0 90 > th dose dependent rect. 8 19
2 101.54 temperature 10.0 270 > th dose dependent rect. 6 19
3 101.84 temperature 10.0 90 > th dose dependent rect. 7 21
10 103.49 temperature 10.0 10 > th dose dependent rect. 8 20
46 108.43 temperature 10.0 270 > th dose dependent rect. 20 15
130 114.50 temperature 30.0 90 < th dose dependent rect. 3 16
151 115.20 wind 1.0 270 > th dose independent rect. 3 2
157 115.42 temperature 15.0 270 > th dose dependent rect. 7 3
171 115.95 radiation 1.0 270 < th dose dependent rect. 3 15
182 116.29 radiation 1.0 270 < th dose independent rect. 2 16
185 116.39 wind 9.0 270 < th dose dependent rect. 6 20
188 116.43 temperature 30.0 10 < th dose dependent rect. 4 16
190 116.46 wind 1.0 270 > th dose independent rect. 2 4
191 116.47 radiation 1.0 270 < th dose dependent rect. 3 10
202 116.66 wind 7.0 270 < th dose independent rect. 6 20
211 116.88 temperature 30.0 270 < th dose dependent rect. 3 2
213 116.91 temperature 30.0 90 < th dose dependent rect. 3 20
214 116.92 wind 9.0 90 < th dose dependent rect. 8 20
215 116.92 temperature 30.0 90 < th dose dependent rect. 11 21
235 117.53 wind 7.0 90 < th dose independent rect. 8 20
250 117.80 atmosphere 1000.0 270 > th dose dependent rect. 2 4
255 117.86 radiation 1.0 270 < th dose independent rect. 2 11
275 118.31 wind 9.0 270 < th dose independent rect. 5 22
287 118.51 temperature 30.0 90 < th dose dependent rect. 1 22
289 118.58 radiation 1.0 270 < th dose dependent sin 2 NA
305 118.83 atmosphere 1000.0 270 > th dose dependent rect. 3 2
311 118.90 radiation 1.0 270 < th dose independent sin 3 NA
317 118.95 temperature 15.0 10 > th dose dependent rect. 8 6
322 119.01 wind 5.0 270 < th dose independent rect. 3 2
331 119.08 radiation 1.0 270 > th dose independent sin 3 NA
332 119.09 precipitation 0.1 270 < th dose independent rect. 5 22
333 119.09 precipitation 0.1 270 < th dose dependent rect. 5 22
342 119.21 wind 5.0 270 < th dose independent rect. 2 4
358 119.37 temperature 30.0 270 < th dose dependent rect. 2 4
374 119.61 precipitation 0.1 270 < th dose independent rect. 6 20
377 119.61 precipitation 0.1 270 < th dose dependent rect. 6 20
415 120.06 temperature 30.0 90 < th dose dependent rect. 15 17
422 120.14 temperature 15.0 270 > th dose independent rect. 6 20
443 120.32 temperature 15.0 90 > th dose independent rect. 8 19
457 120.41 radiation 1.0 270 > th dose independent rect. 17 22
459 120.42 radiation 1.0 270 < th dose dependent rect. 3 3
490 120.66 temperature 30.0 90 < th dose dependent rect. 13 19
497 120.72 atmosphere 1000.0 10 > th dose dependent rect. 4 4
504 120.77 temperature 10.0 270 > th dose independent rect. 3 2
506 120.77 temperature 30.0 270 < th dose independent rect. 3 2
507 120.77 humidity 50.0 270 > th dose independent rect. 3 2
510 120.77 atmosphere 995.0 270 > th dose independent rect. 3 2
511 120.77 atmosphere 1010.0 270 < th dose independent rect. 3 2
513 120.77 radiation 20.0 270 < th dose independent rect. 3 2
516 120.77 temperature 10.0 270 > th dose independent rect. 5 22
518 120.78 precipitation 0.1 270 < th dose independent rect. 2 4
519 120.78 precipitation 0.1 270 < th dose dependent rect. 2 4
521 120.80 precipitation 0.1 270 < th dose independent rect. 3 2
522 120.80 precipitation 0.1 270 < th dose dependent rect. 3 2
526 120.86 radiation 40.0 270 < th dose dependent rect. 3 2
531 120.88 temperature 10.0 270 > th dose independent rect. 2 4
533 120.88 temperature 30.0 270 < th dose independent rect. 2 4
534 120.88 humidity 50.0 270 > th dose independent rect. 2 4
537 120.88 atmosphere 995.0 270 > th dose independent rect. 2 4
538 120.88 atmosphere 1015.0 270 < th dose independent rect. 2 4
539 120.88 radiation 20.0 270 < th dose independent rect. 2 4
564 121.02 humidity 90.0 270 < th dose independent rect. 7 3
565 121.04 radiation 1.0 270 < th dose independent rect. 3 3
571 121.08 wind 7.0 270 < th dose dependent rect. 7 3
577 121.14 temperature 15.0 90 > th dose dependent sin 6 NA
586 121.18 radiation 40.0 270 < th dose dependent rect. 2 4
620 121.39 wind 9.0 90 < th dose dependent rect. 8 5
643 121.51 wind 9.0 270 < th dose dependent rect. 6 7
669 121.68 temperature 30.0 90 < th dose dependent rect. 23 23
686 121.82 precipitation 0.1 90 < th dose independent rect. 8 19
689 121.82 precipitation 0.1 90 < th dose dependent rect. 8 19
728 122.09 temperature 10.0 270 > th dose dependent rect. 17 9
739 122.16 temperature 30.0 90 < th dose dependent sin 5 NA
826 122.56 temperature 20.0 270 > th dose independent rect. 20 15
865 122.76 wind 5.0 270 < th dose independent rect. 7 3
870 122.80 humidity 90.0 90 < th dose independent rect. 8 6
879 122.84 temperature 25.0 270 > th dose independent rect. 17 19
906 122.92 radiation 1.0 270 > th dose independent rect. 7 3
947 123.08 temperature 20.0 270 > th dose independent rect. 6 5