Os03g0241600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os03g0241600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.67 | 0.419 | 10.9 | -0.598 | 2.47 | -1.65 | 0.469 | -2.12 | -0.286 | 6.61 | 1.11 | 1433 | -- | -- |
| 81.87 | 0.421 | 10.9 | -0.705 | 2.44 | -1.17 | 0.483 | -- | -0.266 | 6.55 | 2.125 | 1442 | -- | -- |
| 80.18 | 0.417 | 10.9 | -0.602 | 2.48 | -1.63 | -- | -2.04 | -0.29 | 6.58 | 1.191 | 1437 | -- | -- |
| 80.53 | 0.418 | 10.9 | -0.774 | 2.51 | -1.29 | -- | -- | -0.4 | 6.51 | 2.026 | 2886 | -- | -- |
| 390.66 | 0.921 | 10.9 | -0.528 | -- | -1.92 | -- | -2.39 | -0.254 | -- | 1.583 | 1468 | -- | -- |
| 100.22 | 0.469 | 10.9 | -0.537 | 2.48 | -- | 0.49 | -- | -0.158 | 6.55 | -- | -- | -- | -- |
| 100.82 | 0.47 | 10.9 | -0.53 | 2.48 | -- | -- | -- | -0.16 | 6.55 | -- | -- | -- | -- |
| 394.19 | 0.925 | 10.9 | -0.7 | -- | -1.43 | -- | -- | -0.272 | -- | 2.377 | 1474 | -- | -- |
| 95.05 | 0.454 | 10.9 | -- | 2.54 | -1.02 | -- | -- | -0.326 | 6.7 | 2.652 | 2861 | -- | -- |
| 421.79 | 0.96 | 10.9 | -0.469 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 108.22 | 0.487 | 10.9 | -- | 2.48 | -- | -- | -- | -0.101 | 6.57 | -- | -- | -- | -- |
| 407.5 | 0.943 | 10.9 | -- | -- | -0.432 | -- | -- | -0.0696 | -- | 2.911 | 2921 | -- | -- |
| 427.59 | 0.965 | 10.9 | -- | -- | -- | -- | -- | -0.0567 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.87 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 7 | 76.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 10 | 76.65 | radiation | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 18 | 76.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 23 | 77.19 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 25 | 77.23 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 26 | 77.28 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 27 | 77.30 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 31 | 77.35 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 36 | 77.46 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 41 | 77.53 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 43 | 77.56 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 50 | 77.71 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 52 | 77.71 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 54 | 77.74 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 69 | 77.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 78 | 78.03 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 81 | 78.07 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 83 | 78.09 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 10 | NA |
| 84 | 78.10 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 105 | 78.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 106 | 78.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 113 | 78.28 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 118 | 78.33 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 126 | 78.40 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 127 | 78.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 128 | 78.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 132 | 78.42 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 137 | 78.46 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 142 | 78.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 143 | 78.48 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 148 | 78.49 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 162 | 78.55 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 166 | 78.57 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 175 | 78.62 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 186 | 78.64 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 198 | 78.66 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 202 | 78.67 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 206 | 78.68 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 213 | 78.70 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 229 | 78.72 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 237 | 78.74 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 241 | 78.75 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 246 | 78.76 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 250 | 78.77 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 258 | 78.79 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 259 | 78.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 270 | 78.81 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 276 | 78.82 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 294 | 78.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 296 | 78.87 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 309 | 78.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 320 | 78.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 337 | 78.94 | humidity | 90.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 351 | 78.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 358 | 78.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 365 | 78.98 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 394 | 79.02 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 395 | 79.02 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 401 | 79.03 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 434 | 79.07 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 448 | 79.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 451 | 79.08 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 484 | 79.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 492 | 79.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 530 | 79.18 | wind | 3.0 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 541 | 79.19 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 16 |
| 543 | 79.20 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 576 | 79.23 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 578 | 79.23 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 16 |
| 589 | 79.24 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 597 | 79.25 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 620 | 79.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 683 | 79.33 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 708 | 79.35 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 747 | 79.39 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 787 | 79.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 798 | 79.43 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 861 | 79.49 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 882 | 79.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 885 | 79.51 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 900 | 79.53 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 902 | 79.53 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 913 | 79.54 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 949 | 79.57 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 981 | 79.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 990 | 79.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 2 |