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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0239000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 16 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.23 (0.0569) R2 : 0.624
β1 : -1.52 (0.208) R2dD : 0.0466 R2D : -0.00129
β2 : 0.536 (0.153) R2dC : 0.0115 R2C : 0.0352
β3 : 3.6 (0.151) R2dE : 0.503 R2E : 0.506
β4 : 3.13 (0.669) R2dD*C : 0.0158 R2D*C : 0.00891
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.921 (0.121) R2dN8 : 0.0634 R2N8 : 0.0191
σ : 1.06
deviance : 520.35
__
_____
C
peak time of C : 5.02
E
wheather : temperature
threshold : 5.53
memory length : 227
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 10.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.83 1.07 6.25 -1.64 0.584 3.58 3.49 -2 -0.981 3.72 8.54 240 17.2 10.3
520.35 1.06 6.23 -1.52 0.536 3.6 3.13 -- -0.921 5.02 5.53 227 17.1 10.4
539.03 1.08 6.24 -1.5 0.449 3.55 -- 0.712 -0.939 3.99 6.993 216 17.4 10.4
539.92 1.08 6.24 -1.54 0.508 3.47 -- -- -0.942 3.72 7.288 208 17.4 10.3
541.75 1.08 6.24 -1.45 -- 3.7 -- 0.95 -0.92 -- 5.466 209 17.6 10.5
627.56 1.17 6.26 -1.28 3.29 -- 1.36 -- -0.825 0.723 -- -- -- --
635.33 1.18 6.27 -1.33 3.29 -- -- -- -0.831 0.669 -- -- -- --
543.39 1.09 6.25 -1.54 -- 3.71 -- -- -0.948 -- 5.66 210 17.6 10.5
600.8 1.14 6.19 -- 0.537 3.36 -- -- -0.74 4.01 4.588 206 17.5 10.2
1312.48 1.69 6.21 -1.21 -- -- -- -- -0.773 -- -- -- -- --
681.66 1.22 6.23 -- 3.27 -- -- -- -0.683 0.65 -- -- -- --
603.77 1.14 6.21 -- -- 3.53 -- -- -0.721 -- 1.582 205 17.6 10.4
1351.02 1.72 6.18 -- -- -- -- -- -0.639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 524.87 temperature 10.0 270 > th dose dependent rect. 17 10
2 525.56 humidity 50.0 90 > th dose dependent rect. 5 12
6 531.41 temperature 15.0 720 > th dose independent rect. 7 5
7 531.80 radiation 1.0 720 > th dose independent rect. 7 5
10 534.08 temperature 10.0 720 > th dose dependent rect. 17 1
11 534.09 temperature 20.0 90 > th dose independent rect. 7 22
12 534.40 temperature 10.0 90 > th dose dependent rect. 8 21
19 536.94 atmosphere 1015.0 720 < th dose independent rect. 24 19
26 539.62 radiation 1.0 720 < th dose dependent rect. 17 7
27 540.05 humidity 80.0 90 > th dose independent rect. 5 11
29 540.46 temperature 15.0 270 > th dose independent rect. 7 12
41 542.57 temperature 25.0 720 > th dose independent rect. 16 3
51 544.47 radiation 10.0 720 < th dose independent rect. 17 2
73 546.90 radiation 20.0 90 < th dose dependent rect. 17 12
74 546.98 radiation 1.0 720 < th dose independent rect. 17 7
81 547.41 radiation 1.0 720 > th dose independent rect. 17 1
83 547.56 precipitation 0.1 720 < th dose independent rect. 24 19
85 547.56 precipitation 0.1 720 < th dose dependent rect. 24 19
88 547.84 wind 3.0 90 < th dose independent rect. 5 2
89 547.97 radiation 40.0 90 < th dose dependent rect. 5 12
95 548.54 radiation 20.0 720 < th dose independent rect. 5 2
100 548.88 radiation 10.0 90 < th dose independent rect. 17 12
104 549.13 atmosphere 995.0 90 > th dose independent rect. 17 12
106 549.23 radiation 40.0 720 < th dose dependent rect. 5 2
108 549.30 wind 7.0 90 < th dose dependent rect. 5 2
110 549.53 atmosphere 1015.0 90 < th dose independent rect. 7 22
112 549.59 temperature 10.0 90 > th dose independent rect. 5 12
113 549.59 temperature 10.0 90 > th dose independent rect. 17 12
114 549.59 atmosphere 1015.0 90 < th dose independent rect. 5 12
120 549.80 precipitation 0.1 90 < th dose independent rect. 5 12
121 549.80 precipitation 0.1 90 < th dose dependent rect. 5 12
122 549.96 radiation 20.0 90 < th dose independent rect. 5 4
128 550.15 wind 1.0 270 > th dose independent rect. 4 2
130 550.26 radiation 20.0 90 < th dose independent rect. 5 2
131 550.27 precipitation 0.1 90 < th dose independent rect. 5 2
132 550.27 precipitation 0.1 90 < th dose dependent rect. 5 2
133 550.34 humidity 50.0 90 > th dose independent rect. 17 12
134 550.39 radiation 30.0 90 < th dose dependent rect. 5 4
136 550.41 radiation 10.0 720 < th dose independent rect. 17 10
141 550.50 temperature 10.0 90 > th dose independent rect. 5 2
143 550.50 temperature 30.0 90 < th dose independent rect. 5 2
144 550.50 humidity 50.0 90 > th dose independent rect. 5 2
146 550.50 atmosphere 995.0 90 > th dose independent rect. 5 2
147 550.50 atmosphere 1015.0 90 < th dose independent rect. 5 2
152 550.67 precipitation 0.1 90 < th dose independent rect. 7 22
153 550.67 precipitation 0.1 90 < th dose dependent rect. 7 22
154 550.70 precipitation 0.1 720 < th dose independent rect. 17 2
155 550.70 precipitation 0.1 720 < th dose dependent rect. 17 2
156 550.73 atmosphere 995.0 90 > th dose independent rect. 7 22
161 550.79 wind 9.0 90 < th dose independent rect. 7 22
163 550.81 precipitation 0.1 90 < th dose independent rect. 17 12
164 550.81 precipitation 0.1 90 < th dose dependent rect. 17 12
166 550.86 wind 9.0 90 < th dose independent rect. 17 12
173 551.22 radiation 40.0 90 < th dose dependent rect. 5 2
175 551.24 precipitation 0.1 720 < th dose independent rect. 6 23
176 551.24 precipitation 0.1 720 < th dose dependent rect. 6 23
183 551.74 humidity 50.0 90 > th dose dependent rect. 5 2
185 551.83 atmosphere 1015.0 720 < th dose independent rect. 7 21
190 552.06 radiation 1.0 270 > th dose independent rect. 7 12
205 552.32 radiation 40.0 30 < th dose independent rect. 5 12
215 552.77 wind 9.0 90 < th dose dependent rect. 17 12
216 552.80 humidity 70.0 720 > th dose independent rect. 5 2
220 552.88 radiation 1.0 720 < th dose dependent rect. 4 20
222 552.94 temperature 25.0 270 < th dose independent rect. 18 13
223 552.95 humidity 70.0 720 > th dose independent rect. 19 5
227 553.23 wind 9.0 720 < th dose independent rect. 7 5
229 553.27 wind 5.0 720 < th dose independent rect. 5 2
241 553.49 temperature 10.0 720 > th dose independent rect. 5 2
242 553.49 temperature 30.0 720 < th dose independent rect. 5 2
243 553.49 humidity 50.0 720 > th dose independent rect. 5 2
245 553.49 atmosphere 995.0 720 > th dose independent rect. 5 2
246 553.49 atmosphere 1015.0 720 < th dose independent rect. 5 2
249 553.49 temperature 10.0 720 > th dose independent rect. 7 22
250 553.53 precipitation 0.1 720 < th dose independent rect. 7 5
251 553.53 precipitation 0.1 720 < th dose dependent rect. 7 5
253 553.62 radiation 1.0 720 > th dose independent rect. 16 20
263 553.85 atmosphere 995.0 90 > th dose independent rect. 5 12
269 553.96 radiation 1.0 720 < th dose independent rect. 4 20
270 553.97 temperature 10.0 720 > th dose independent rect. 17 2
271 553.97 atmosphere 1015.0 720 < th dose independent rect. 17 2
274 553.97 temperature 10.0 720 > th dose independent rect. 19 22
276 554.05 atmosphere 1015.0 90 < th dose independent rect. 17 12
278 554.13 humidity 50.0 720 > th dose independent rect. 7 5
280 554.17 atmosphere 995.0 720 > th dose dependent rect. 5 1
293 554.50 temperature 10.0 90 > th dose dependent rect. 5 2
295 554.53 wind 9.0 90 < th dose independent rect. 5 12
298 554.60 radiation 1.0 720 < th dose dependent rect. 7 17
305 554.91 wind 9.0 720 < th dose independent rect. 19 5
308 555.01 humidity 50.0 90 > th dose dependent rect. 5 4
310 555.12 wind 9.0 720 < th dose independent rect. 17 2
319 555.40 precipitation 0.1 720 < th dose independent rect. 19 5
320 555.40 precipitation 0.1 720 < th dose dependent rect. 19 5
323 555.44 wind 9.0 90 < th dose dependent rect. 9 20
330 555.62 radiation 40.0 90 < th dose dependent rect. 5 6
334 555.74 humidity 80.0 90 > th dose independent rect. 5 6
335 555.74 atmosphere 995.0 90 > th dose dependent rect. 5 2
342 555.91 temperature 10.0 720 > th dose independent rect. 19 5
343 555.91 temperature 30.0 720 < th dose independent rect. 19 5
344 555.91 humidity 50.0 720 > th dose independent rect. 19 5
345 555.91 atmosphere 995.0 720 > th dose independent rect. 19 5
346 555.91 radiation 1.0 720 < th dose independent rect. 19 5
351 555.91 temperature 10.0 720 > th dose independent rect. 24 19
360 555.96 temperature 30.0 270 < th dose dependent rect. 17 14
370 556.04 atmosphere 995.0 720 > th dose independent rect. 7 5
371 556.04 atmosphere 1015.0 720 < th dose independent rect. 7 5
372 556.04 temperature 10.0 720 > th dose independent rect. 12 19
373 556.06 precipitation 0.1 720 < th dose independent rect. 5 2
374 556.06 precipitation 0.1 720 < th dose dependent rect. 5 2
377 556.16 radiation 1.0 90 > th dose independent rect. 4 3
391 556.27 temperature 20.0 90 > th dose independent rect. 17 12
415 556.73 temperature 25.0 270 < th dose independent rect. 15 16
418 556.78 radiation 40.0 720 < th dose dependent rect. 17 2
426 556.93 radiation 10.0 30 < th dose dependent sin 11 NA
427 556.95 radiation 1.0 720 < th dose independent rect. 7 17
433 557.01 wind 1.0 720 > th dose independent rect. 17 2
435 557.07 humidity 50.0 90 > th dose independent rect. 7 22
447 557.15 radiation 40.0 720 < th dose independent rect. 19 14
453 557.21 temperature 30.0 270 < th dose dependent rect. 21 10
457 557.32 temperature 20.0 90 > th dose independent rect. 19 10
458 557.32 radiation 20.0 720 < th dose independent rect. 21 10
465 557.33 temperature 10.0 1440 > th dose independent rect. 10 20
469 557.35 temperature 10.0 720 > th dose dependent rect. 5 1
477 557.45 atmosphere 1015.0 90 < th dose dependent rect. 5 2
500 557.79 radiation 40.0 720 < th dose independent rect. 15 14
531 558.07 wind 1.0 30 > th dose independent rect. 23 10
533 558.15 wind 7.0 720 < th dose independent rect. 21 10
534 558.15 temperature 15.0 720 > th dose independent rect. 9 10
542 558.31 wind 9.0 4320 < th dose independent rect. 6 3
550 558.53 radiation 1.0 270 < th dose independent rect. 4 11
551 558.56 wind 9.0 720 < th dose independent rect. 19 14
599 559.06 temperature 10.0 720 > th dose independent rect. 5 10
600 559.06 atmosphere 1015.0 720 < th dose independent rect. 5 10
601 559.06 temperature 10.0 720 > th dose independent rect. 15 14
607 559.16 wind 1.0 270 > th dose independent rect. 3 14
613 559.28 temperature 10.0 720 > th dose independent rect. 17 10
616 559.28 temperature 10.0 720 > th dose independent rect. 3 14
617 559.29 humidity 50.0 720 > th dose independent rect. 17 2
622 559.35 humidity 50.0 720 > th dose dependent rect. 5 1
643 559.58 radiation 40.0 720 < th dose dependent rect. 21 10
645 559.65 precipitation 0.1 270 < th dose independent rect. 7 12
647 559.65 precipitation 0.1 270 < th dose dependent rect. 7 12
656 559.76 atmosphere 1015.0 720 < th dose independent rect. 9 10
657 559.76 temperature 10.0 720 > th dose independent rect. 19 14
658 559.76 humidity 50.0 720 > th dose independent rect. 19 14
659 559.76 atmosphere 995.0 720 > th dose independent rect. 19 14
691 560.11 humidity 50.0 90 > th dose independent rect. 5 12
697 560.19 wind 1.0 720 > th dose independent rect. 19 5
701 560.25 humidity 90.0 270 < th dose independent rect. 7 13
723 560.52 temperature 10.0 1440 > th dose independent rect. 6 12
726 560.52 temperature 10.0 1440 > th dose independent rect. 18 12
729 560.52 humidity 50.0 1440 > th dose independent rect. 18 12
731 560.52 radiation 20.0 1440 < th dose independent rect. 18 12
741 560.53 radiation 30.0 90 < th dose dependent rect. 5 8
742 560.54 wind 1.0 270 > th dose independent rect. 21 10
743 560.55 atmosphere 995.0 720 > th dose independent rect. 17 1
744 560.55 humidity 90.0 10 < th dose independent rect. 5 2
748 560.57 humidity 70.0 720 > th dose independent rect. 21 10
750 560.63 humidity 90.0 720 < th dose independent rect. 9 3
755 560.75 temperature 30.0 90 < th dose dependent rect. 5 2
772 561.01 temperature 10.0 720 > th dose independent rect. 21 10
773 561.01 temperature 30.0 720 < th dose independent rect. 21 10
774 561.01 humidity 50.0 720 > th dose independent rect. 21 10
776 561.01 atmosphere 995.0 720 > th dose independent rect. 21 10
779 561.02 temperature 15.0 4320 > th dose independent rect. 7 1
812 561.27 humidity 50.0 90 > th dose dependent rect. 17 12
822 561.31 precipitation 0.1 270 < th dose independent rect. 19 12
823 561.31 wind 9.0 720 < th dose independent rect. 12 19
824 561.31 precipitation 0.1 270 < th dose dependent rect. 19 12
874 561.57 atmosphere 1015.0 720 < th dose independent rect. 7 14
880 561.64 temperature 10.0 10 > th dose dependent rect. 9 14
885 561.66 atmosphere 995.0 90 > th dose dependent rect. 5 12
902 561.83 radiation 20.0 270 < th dose independent rect. 19 12
964 562.47 humidity 60.0 270 > th dose independent rect. 19 12
966 562.49 wind 9.0 270 < th dose independent rect. 19 12
970 562.53 temperature 10.0 270 > th dose independent rect. 19 12
973 562.53 atmosphere 995.0 270 > th dose independent rect. 19 12
974 562.53 atmosphere 1015.0 270 < th dose independent rect. 7 12
983 562.68 wind 9.0 720 < th dose independent rect. 17 10