Os03g0235400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0235400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.05 | 0.332 | 8.8 | 0.938 | 0.489 | -1.3 | 0.501 | 2.73 | 0.272 | 1.18 | 25.7 | 28 | -- | -- |
| 52.15 | 0.339 | 8.83 | 0.651 | 0.507 | -1.07 | 0.226 | -- | 0.201 | 1.3 | 25.7 | 28 | -- | -- |
| 50.88 | 0.332 | 8.8 | 0.888 | 0.484 | -1.3 | -- | 2.27 | 0.264 | 1.04 | 25.82 | 20 | -- | -- |
| 52.33 | 0.339 | 8.83 | 0.644 | 0.507 | -1.09 | -- | -- | 0.197 | 1.28 | 25.82 | 20 | -- | -- |
| 60.79 | 0.363 | 8.78 | 1.03 | -- | -1.74 | -- | 2.96 | 0.314 | -- | 25.6 | 14 | -- | -- |
| 68.93 | 0.389 | 8.84 | 0.505 | 0.874 | -- | 0.531 | -- | 0.148 | 1.98 | -- | -- | -- | -- |
| 70.01 | 0.392 | 8.85 | 0.489 | 0.874 | -- | -- | -- | 0.145 | 1.95 | -- | -- | -- | -- |
| 63.3 | 0.371 | 8.82 | 0.728 | -- | -1.52 | -- | -- | 0.247 | -- | 25.46 | 9 | -- | -- |
| 62.88 | 0.371 | 8.85 | -- | 0.572 | -0.932 | -- | -- | 0.119 | 1.47 | 25.88 | 19 | -- | -- |
| 116.08 | 0.503 | 8.84 | 0.525 | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
| 76.31 | 0.409 | 8.86 | -- | 0.883 | -- | -- | -- | 0.0907 | 1.96 | -- | -- | -- | -- |
| 76.85 | 0.408 | 8.84 | -- | -- | -1.4 | -- | -- | 0.154 | -- | 25.55 | 3 | -- | -- |
| 123.36 | 0.518 | 8.85 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.67 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 4 | 47.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 15 | 48.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 25 | 48.55 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 28 | 48.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 40 | 48.98 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 42 | 49.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 50 | 49.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 130 | 50.37 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 134 | 50.39 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 136 | 50.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 315 | 51.04 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 318 | 51.05 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 319 | 51.05 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 371 | 51.15 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 416 | 51.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 446 | 51.50 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 624 | 52.40 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 738 | 52.86 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 762 | 52.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 774 | 53.00 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 799 | 53.11 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 15 |
| 846 | 53.30 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 12 |
| 879 | 53.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 915 | 53.57 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 957 | 53.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 991 | 53.78 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 994 | 53.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |