Os03g0235300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LeOPT1.
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Os03g0235300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LeOPT1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.27 | 0.305 | 8.45 | -0.953 | 0.771 | -1.53 | 0.395 | -0.804 | 0.136 | 5.32 | 25.1 | 89 | -- | -- |
| 43.15 | 0.308 | 8.47 | -1.05 | 0.745 | -1.42 | 0.246 | -- | 0.112 | 5.14 | 25.3 | 86 | -- | -- |
| 42.59 | 0.304 | 8.46 | -0.972 | 0.769 | -1.52 | -- | -0.671 | 0.134 | 5.41 | 25.03 | 97 | -- | -- |
| 43.31 | 0.309 | 8.47 | -1.05 | 0.746 | -1.42 | -- | -- | 0.111 | 5.14 | 25.3 | 86 | -- | -- |
| 67.36 | 0.384 | 8.45 | -0.898 | -- | -1.42 | -- | -0.677 | 0.243 | -- | 23.34 | 36 | -- | -- |
| 73.64 | 0.402 | 8.4 | -0.717 | 0.627 | -- | 0.122 | -- | 0.401 | 6.71 | -- | -- | -- | -- |
| 73.68 | 0.402 | 8.4 | -0.715 | 0.627 | -- | -- | -- | 0.401 | 6.71 | -- | -- | -- | -- |
| 68.07 | 0.386 | 8.46 | -0.977 | -- | -1.33 | -- | -- | 0.224 | -- | 23.5 | 36 | -- | -- |
| 69.63 | 0.391 | 8.43 | -- | 0.687 | -1.03 | -- | -- | 0.297 | 5.58 | 25.3 | 36 | -- | -- |
| 94.21 | 0.454 | 8.42 | -0.7 | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
| 87.14 | 0.437 | 8.38 | -- | 0.618 | -- | -- | -- | 0.481 | 6.78 | -- | -- | -- | -- |
| 91.34 | 0.447 | 8.42 | -- | -- | -1.01 | -- | -- | 0.376 | -- | 23.3 | 9 | -- | -- |
| 107.14 | 0.483 | 8.4 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 7 | 42.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 9 | 42.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 21 | 42.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 22 | 42.28 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 30 | 42.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 31 | 42.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 34 | 42.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 36 | 42.39 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 38 | 42.39 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 40 | 42.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 43 | 42.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 59 | 42.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 79 | 43.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 314 | 46.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 21 |
| 328 | 46.78 | temperature | 15 | 10 | > th | dose dependent | sin | 9 | NA |
| 332 | 46.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 333 | 46.79 | temperature | 30 | 10 | < th | dose dependent | sin | 9 | NA |
| 339 | 46.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 406 | 46.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 407 | 46.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 408 | 46.96 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 415 | 46.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 435 | 47.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 440 | 47.01 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 574 | 47.27 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 661 | 47.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 688 | 47.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 727 | 47.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 774 | 47.71 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 795 | 47.74 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 854 | 47.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 858 | 47.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 941 | 47.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |