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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0235200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.0311) R2 : 0.868
β1 : 2.43 (0.114) R2dD : 0.137 R2D : 0.108
β2 : 5.13 (0.106) R2dC : 1.16 R2C : 0.578
β3 : 2.41 (0.133) R2dE : 0.166 R2E : -0.406
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.336 (0.0674) R2dN8 : 0.01 R2N8 : -0.0218
σ : 0.582
deviance : 156.05
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_____
C
peak time of C : 18
E
wheather : temperature
threshold : 30.05
memory length : 91
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23
open length of G : 8.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.01 0.581 6.07 2.45 5.1 2.37 0.843 -0.349 0.334 18 30.06 90 23 8.17
153.25 0.577 6.07 2.43 5.11 2.39 1.08 -- 0.33 18 30 90 23 8.13
154.11 0.578 6.07 2.47 5.15 2.41 -- -0.785 0.343 18 30.12 92 23 8.22
156.05 0.582 6.07 2.43 5.13 2.41 -- -- 0.336 18 30.05 91 23 8.2
255.6 0.745 6.16 2.49 -- -3.94 -- 0.198 -0.228 -- 63.38 382 22.2 11.2
210 0.679 6.11 2.29 3.99 -- 1.09 -- 0.116 18.9 -- -- -- --
213.04 0.684 6.11 2.27 4 -- -- -- 0.118 18.9 -- -- -- --
227.15 0.702 6.01 2.38 -- -3.51 -- -- 0.072 -- 163.1 311 22.1 12.1
309.44 0.819 6.1 -- 5.28 2.43 -- -- 0.126 18 33.29 147 22.7 7.8
1049.63 1.51 6.02 2.19 -- -- -- -- 0.0425 -- -- -- -- --
349.12 0.874 6.17 -- 3.97 -- -- -- -0.135 18.9 -- -- -- --
358.54 0.882 6.08 -- -- -3.46 -- -- -0.201 -- 209.3 312 22.1 12.2
1175.74 1.6 6.08 -- -- -- -- -- -0.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.39 temperature 30 90 < th dose dependent rect. 23 8
30 166.62 temperature 20 90 > th dose independent rect. 19 16
31 166.64 temperature 20 270 > th dose independent rect. 17 17
40 168.05 temperature 10 270 > th dose dependent rect. 18 15
46 168.58 temperature 20 10 > th dose independent rect. 20 16
99 171.99 temperature 20 90 < th dose independent rect. 23 7
102 172.02 temperature 10 270 > th dose dependent rect. 9 8
152 173.12 temperature 20 10 < th dose dependent rect. 13 18
159 173.27 temperature 20 10 < th dose dependent rect. 16 15
166 173.34 temperature 20 10 < th dose dependent rect. 13 21
172 173.49 temperature 20 10 < th dose dependent rect. 16 19
192 173.68 temperature 20 270 > th dose independent rect. 16 9
256 174.50 temperature 20 10 < th dose independent rect. 23 8
269 174.70 atmosphere 1010 270 < th dose independent rect. 16 8
297 174.96 temperature 20 10 < th dose dependent sin 9 NA
421 176.27 radiation 40 270 < th dose dependent rect. 6 16
446 176.70 radiation 40 270 < th dose independent rect. 17 17
454 176.79 radiation 40 270 < th dose independent rect. 6 16
479 177.08 wind 1 30 > th dose independent rect. 12 18
520 177.68 wind 7 270 < th dose independent rect. 10 7
532 177.79 radiation 20 270 < th dose independent rect. 6 16
537 177.95 temperature 20 90 < th dose independent sin 9 NA
538 177.95 temperature 20 30 < th dose independent rect. 13 18
540 177.96 radiation 40 270 < th dose dependent rect. 6 4
554 178.12 humidity 90 90 < th dose independent rect. 3 2
557 178.16 humidity 70 270 > th dose independent rect. 5 6
570 178.29 atmosphere 1015 270 < th dose independent rect. 17 17
572 178.30 temperature 20 90 < th dose independent rect. 16 14
573 178.30 radiation 40 270 < th dose dependent rect. 4 22
580 178.36 temperature 15 270 > th dose dependent rect. 17 8
584 178.38 temperature 15 10 > th dose dependent rect. 20 16
585 178.39 humidity 90 90 < th dose dependent rect. 3 2
630 178.76 radiation 40 270 < th dose independent rect. 5 6
633 178.77 humidity 90 10 < th dose dependent rect. 3 2
649 178.91 atmosphere 995 90 > th dose dependent rect. 23 7
651 178.91 radiation 1 270 < th dose dependent rect. 21 10
676 179.05 humidity 80 90 < th dose independent rect. 1 5
680 179.07 atmosphere 995 90 > th dose dependent rect. 12 18
701 179.16 radiation 30 270 < th dose independent rect. 6 4
722 179.25 radiation 40 270 < th dose independent rect. 4 22
737 179.33 humidity 90 270 < th dose independent rect. 10 7
771 179.53 radiation 1 270 < th dose independent rect. 21 10
823 179.80 radiation 40 270 < th dose dependent rect. 17 17
833 179.85 temperature 15 10 > th dose dependent sin 9 NA
847 179.89 wind 7 270 < th dose independent rect. 10 19
887 180.02 radiation 40 270 < th dose dependent rect. 7 2
924 180.15 atmosphere 1015 270 < th dose independent rect. 6 15
942 180.23 temperature 15 270 > th dose independent rect. 10 7
946 180.24 temperature 30 270 < th dose independent rect. 4 8
950 180.25 temperature 15 10 > th dose dependent rect. 20 14
964 180.29 humidity 50 270 > th dose dependent rect. 5 7
965 180.30 radiation 20 270 < th dose independent rect. 4 22