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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0235000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peroxidase (EC 1.11.1.7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0919) R2 : 0.459
β1 : 0.646 (0.335) R2dD : 0.00455 R2D : -0.00382
β2 : 3.9 (0.227) R2dC : 0.388 R2C : 0.165
β3 : 6.06 (0.413) R2dE : 0.315 R2E : 0.0285
β4 : 2.47 (0.826) R2dD*C : 0.0108 R2D*C : -0.00183
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.989 (0.206) R2dN8 : 0.0401 R2N8 : -0.0377
σ : 1.7
deviance : 1325.41
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_____
C
peak time of C : 23.2
E
wheather : radiation
threshold : 23.93
memory length : 1305
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1320.01 1.71 4.35 1.01 3.22 5.33 2.17 -3.14 1.06 0.0234 21.24 1312 13.8 --
1325.41 1.7 4.4 0.646 3.9 6.06 2.47 -- 0.989 23.2 23.93 1305 11.7 --
1333.42 1.7 4.35 0.958 3.63 6.29 -- -4.99 1.09 22.8 24.73 1257 12.1 --
1350.71 1.71 4.41 0.546 3.89 5.87 -- -- 0.968 23.3 25.04 1307 11.6 --
1483.27 1.79 4.27 0.122 -- 6.79 -- -1.42 0.945 -- 15.09 2039 12.5 --
1807.76 1.99 4.59 0.18 3.21 -- 0.955 -- -0.0908 1.2 -- -- -- --
1811.43 1.99 4.59 0.146 3.21 -- -- -- -0.0968 1.25 -- -- -- --
1462.55 1.78 4.34 0.147 -- 6.55 -- -- 0.879 -- 16.07 2043 12.9 --
1357.25 1.72 4.43 -- 3.9 5.8 -- -- 0.858 23.3 23.23 1308 11.6 --
2446.95 2.31 4.54 0.27 -- -- -- -- -0.0312 -- -- -- -- --
1811.99 1.99 4.59 -- 3.21 -- -- -- -0.113 1.25 -- -- -- --
1463.09 1.78 4.34 -- -- 6.56 -- -- 0.861 -- 15.75 2044 12.9 --
2448.87 2.31 4.55 -- -- -- -- -- -0.0611 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1342.81 radiation 20 1440 > th dose independent rect. 11 22
3 1346.75 radiation 10 1440 > th dose independent rect. 16 23
5 1349.85 radiation 20 1440 < th dose dependent rect. 11 20
6 1350.00 radiation 10 1440 > th dose independent rect. 8 23
10 1352.42 radiation 20 1440 < th dose dependent sin 20 NA
27 1358.91 radiation 20 1440 < th dose dependent rect. 8 16
28 1358.93 radiation 20 1440 < th dose dependent rect. 8 11
29 1359.02 radiation 20 1440 < th dose dependent rect. 8 19
45 1360.16 radiation 10 1440 > th dose independent rect. 6 12
58 1360.45 radiation 10 1440 > th dose independent no NA NA
125 1360.69 radiation 20 1440 < th dose dependent rect. 10 14
126 1360.71 radiation 20 1440 < th dose dependent rect. 10 9
129 1360.77 radiation 20 1440 < th dose dependent rect. 10 17
158 1362.76 radiation 1 1440 > th dose dependent rect. 13 5
171 1363.01 radiation 20 1440 > th dose independent rect. 7 10
185 1363.06 radiation 1 1440 > th dose dependent sin 16 NA
280 1363.23 radiation 20 1440 > th dose independent sin 21 NA
348 1365.87 wind 9 43200 < th dose independent rect. 15 2
435 1368.60 radiation 20 1440 > th dose independent rect. 11 6
658 1372.60 radiation 20 1440 < th dose dependent rect. 2 22
659 1372.62 radiation 20 1440 < th dose dependent rect. 2 17
661 1372.68 radiation 20 1440 < th dose dependent rect. 21 22
692 1372.90 radiation 20 1440 < th dose dependent no NA NA
699 1372.93 radiation 20 1440 < th dose dependent rect. 23 23
829 1376.59 radiation 20 1440 < th dose dependent rect. 16 23
889 1377.47 wind 9 43200 > th dose independent rect. 15 2