Os03g0234900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0234900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase (EC 1.11.1.7).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.25	(0.0424)	R²	:	0.195
β₁	:	-0.95	(0.153)	R²_dD	:	0.0859	R²_D	:	-0.0219
β₂	:	0.593	(0.0983)	R²_dC	:	0.0664	R²_C	:	0.0362
β₃	:	-16.2	(2.46)	R²_dE	:	1.8	R²_E	:	-2.14
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-73.6	(9.96)	R²_dD*E	:	2.27	R²_D*E	:	-1.75
γ₁	:	-0.187	(0.0811)	R²_dN8	:	0.0127	R²_N8	:	-0.0304
σ	:	0.708
deviance	:	231.19
__

_____

C
peak time of C	:	7.52
E
wheather	:	wind
threshold	:	8.889
memory length	:	83
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	sin
peak or start time of G	:	6.69
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
228.75	0.711	3.25	-0.903	0.592	-16.2	-0.98	-74.1	-0.184	7.84	8.898	79	6.91	--
261.81	0.759	3.4	-0.52	0.518	-0.334	-0.568	--	-0.22	8.12	8.898	79	6.91	--
231.19	0.708	3.25	-0.95	0.593	-16.2	--	-73.6	-0.187	7.52	8.889	83	6.69	--
257.45	0.752	3.39	-0.474	0.563	1.55	--	--	-0.2	7.66	8.416	69	8.09	--
249.74	0.736	3.27	-0.935	--	-16	--	-71.1	-0.183	--	8.846	83	6.72	--
261.92	0.759	3.4	-0.516	0.52	--	-0.582	--	-0.219	8.14	--	--	--	--
262.76	0.759	3.4	-0.535	0.529	--	--	--	-0.22	7.73	--	--	--	--
274.3	0.775	3.41	-0.478	--	1.26	--	--	-0.195	--	8.416	69	8.09	--
263.17	0.756	3.38	--	0.593	1.77	--	--	-0.151	7.69	8.4	75	8.77	--
277.86	0.779	3.41	-0.528	--	--	--	--	-0.212	--	--	--	--	--
270.31	0.769	3.38	--	0.525	--	--	--	-0.16	7.81	--	--	--	--
280.08	0.782	3.39	--	--	1.39	--	--	-0.139	--	8.4	75	8.77	--
285.22	0.788	3.4	--	--	--	--	--	-0.154	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	225.23	wind	9.0	10	> th	dose independent	rect.	18	1
4	225.23	wind	9.0	10	> th	dose dependent	rect.	18	1
10	227.93	wind	9.0	90	> th	dose dependent	rect.	16	10
42	228.66	wind	9.0	90	> th	dose independent	rect.	17	9
51	228.71	wind	9.0	90	> th	dose independent	rect.	17	6
76	231.51	wind	9.0	90	> th	dose independent	sin	13	NA
77	232.53	wind	9.0	90	> th	dose dependent	sin	13	NA
79	233.04	wind	9.0	90	> th	dose independent	rect.	14	6
80	233.04	wind	9.0	90	> th	dose independent	rect.	14	12
183	235.32	wind	9.0	90	> th	dose dependent	rect.	12	6
185	235.41	wind	9.0	90	> th	dose dependent	rect.	12	14
203	235.44	wind	9.0	90	> th	dose dependent	rect.	12	10
219	238.50	wind	9.0	90	< th	dose independent	sin	14	NA
226	243.49	humidity	70.0	90	< th	dose independent	rect.	16	1
234	243.79	radiation	30.0	90	< th	dose dependent	rect.	8	1
257	245.04	radiation	30.0	90	< th	dose independent	rect.	8	1
384	246.97	atmosphere	1005.0	90	> th	dose independent	rect.	8	1
386	246.97	humidity	90.0	30	< th	dose independent	rect.	8	13
395	247.16	temperature	20.0	10	> th	dose dependent	rect.	8	2
401	247.28	wind	1.0	10	> th	dose independent	rect.	10	22
434	247.52	atmosphere	1005.0	10	> th	dose independent	rect.	8	2
435	247.53	temperature	20.0	90	> th	dose independent	rect.	8	1
458	247.81	wind	1.0	30	> th	dose independent	rect.	21	11
460	247.82	temperature	20.0	30	> th	dose independent	rect.	8	13
484	247.99	radiation	40.0	10	< th	dose independent	rect.	10	22
497	248.07	wind	9.0	90	< th	dose independent	sin	16	NA
551	248.55	wind	5.0	90	< th	dose dependent	rect.	8	1
562	248.79	humidity	90.0	270	< th	dose independent	rect.	6	3
564	248.85	humidity	90.0	90	< th	dose independent	rect.	8	1
565	248.85	temperature	20.0	10	> th	dose independent	rect.	8	2
567	248.89	wind	9.0	90	< th	dose independent	rect.	9	23
579	248.98	atmosphere	995.0	90	> th	dose dependent	rect.	8	1
602	249.11	wind	9.0	10	> th	dose independent	sin	12	NA
616	249.42	temperature	20.0	270	> th	dose independent	rect.	6	3
617	249.49	wind	3.0	90	< th	dose independent	rect.	8	1
618	249.50	humidity	90.0	270	< th	dose independent	rect.	5	14
632	249.54	temperature	20.0	30	> th	dose dependent	rect.	2	8
643	249.61	radiation	20.0	30	< th	dose independent	rect.	21	11
650	249.68	wind	9.0	30	< th	dose independent	rect.	8	13
651	249.70	wind	7.0	90	< th	dose independent	rect.	8	1
653	249.71	humidity	70.0	90	> th	dose independent	rect.	8	1
655	249.71	atmosphere	995.0	90	> th	dose independent	rect.	9	23
659	249.73	atmosphere	1000.0	10	> th	dose dependent	rect.	8	2
660	249.76	temperature	30.0	90	< th	dose independent	rect.	8	1
666	249.79	temperature	10.0	90	> th	dose independent	rect.	8	1
668	249.79	humidity	50.0	90	> th	dose independent	rect.	8	1
670	249.79	atmosphere	1015.0	90	< th	dose independent	rect.	8	1
671	249.79	precipitation	0.1	90	< th	dose independent	rect.	8	1
672	249.79	temperature	10.0	90	> th	dose independent	rect.	9	23
673	249.79	precipitation	0.1	90	< th	dose dependent	rect.	8	1
674	249.80	radiation	10.0	10	< th	dose dependent	rect.	9	1
679	249.87	wind	1.0	30	> th	dose independent	rect.	8	13
686	249.91	radiation	1.0	90	> th	dose independent	rect.	8	1
697	250.04	atmosphere	1005.0	30	> th	dose dependent	rect.	17	1
707	250.09	precipitation	0.1	90	< th	dose independent	rect.	9	23
708	250.09	precipitation	0.1	90	< th	dose dependent	rect.	9	23
710	250.12	wind	1.0	90	> th	dose independent	rect.	8	1
721	250.21	wind	7.0	10	> th	dose dependent	rect.	16	4
729	250.27	wind	7.0	10	> th	dose dependent	rect.	17	12
741	250.30	temperature	10.0	1440	> th	dose independent	rect.	22	11
744	250.30	humidity	50.0	1440	> th	dose independent	rect.	22	11
746	250.30	atmosphere	995.0	1440	> th	dose independent	rect.	22	11
747	250.30	temperature	10.0	1440	> th	dose independent	rect.	9	13
765	250.33	temperature	20.0	10	> th	dose independent	rect.	8	11
768	250.35	temperature	10.0	30	> th	dose independent	rect.	21	11
769	250.35	temperature	30.0	30	< th	dose independent	rect.	21	11
770	250.35	humidity	50.0	30	> th	dose independent	rect.	21	11
772	250.35	atmosphere	995.0	30	> th	dose independent	rect.	21	11
775	250.35	atmosphere	1015.0	30	< th	dose independent	rect.	8	13
777	250.36	precipitation	0.1	30	< th	dose independent	rect.	8	13
778	250.36	precipitation	0.1	30	< th	dose dependent	rect.	8	13
783	250.39	wind	9.0	30	< th	dose independent	rect.	21	11
786	250.41	radiation	1.0	270	< th	dose dependent	rect.	18	18
788	250.45	temperature	20.0	270	> th	dose independent	rect.	5	13
804	250.50	radiation	40.0	30	< th	dose independent	rect.	21	11
807	250.51	humidity	70.0	10	> th	dose independent	rect.	8	2
811	250.54	precipitation	0.1	30	< th	dose independent	rect.	21	11
812	250.54	precipitation	0.1	30	< th	dose dependent	rect.	21	11
814	250.55	atmosphere	1005.0	30	> th	dose independent	rect.	10	7
819	250.59	temperature	20.0	270	> th	dose independent	rect.	5	5
821	250.61	radiation	40.0	30	< th	dose dependent	rect.	21	11
831	250.66	humidity	90.0	30	< th	dose independent	rect.	8	11
838	250.74	humidity	80.0	10	< th	dose independent	rect.	8	2
847	250.77	wind	1.0	10	> th	dose dependent	rect.	8	2
871	250.92	humidity	50.0	30	> th	dose independent	rect.	8	13
875	250.97	atmosphere	1015.0	720	< th	dose independent	rect.	22	5
876	250.99	atmosphere	995.0	30	> th	dose independent	rect.	8	13
884	251.03	humidity	50.0	90	> th	dose dependent	rect.	8	1
898	251.13	humidity	70.0	720	> th	dose independent	rect.	18	4
905	251.17	radiation	1.0	270	< th	dose independent	rect.	18	18
926	251.31	atmosphere	1015.0	720	< th	dose independent	rect.	22	20
927	251.31	temperature	10.0	10	> th	dose dependent	rect.	8	13
928	251.32	temperature	30.0	720	< th	dose independent	rect.	18	4
931	251.32	wind	9.0	10	< th	dose independent	rect.	10	22
954	251.41	humidity	70.0	720	> th	dose independent	rect.	19	11
955	251.41	wind	7.0	270	< th	dose independent	rect.	22	12
977	251.50	atmosphere	995.0	10	> th	dose independent	rect.	10	22
984	251.52	temperature	30.0	10	< th	dose independent	rect.	8	2
990	251.56	precipitation	0.1	10	< th	dose independent	rect.	10	22
991	251.56	precipitation	0.1	10	< th	dose dependent	rect.	10	22
999	251.59	wind	1.0	30	> th	dose independent	rect.	19	13
1000	251.60	wind	9.0	10	< th	dose independent	rect.	8	2