Os03g0234500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Class III peroxidase 39 precursor (EC 1.11.1.7).
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Os03g0234500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Class III peroxidase 39 precursor (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 445.11 | 0.991 | 3.3 | -0.403 | 0.364 | 4.53 | -1.36 | -9.11 | -0.306 | 4.56 | 93.3 | 446 | 12.7 | -- |
| 488.12 | 1.03 | 3.3 | -0.538 | 0.328 | 4.79 | -2.47 | -- | -0.315 | 4.43 | 93.25 | 474 | 12.4 | -- |
| 439.83 | 0.977 | 3.3 | -0.324 | 0.405 | 4.87 | -- | -11.9 | -0.326 | 3.59 | 93.91 | 412 | 12.6 | -- |
| 487.16 | 1.03 | 3.3 | -0.536 | 0.291 | 7.23 | -- | -- | -0.362 | 1.63 | 94.85 | 376 | 12.2 | -- |
| 447.98 | 0.986 | 3.3 | -0.334 | -- | 5.15 | -- | -11.4 | -0.296 | -- | 93.85 | 412 | 12.5 | -- |
| 618.57 | 1.17 | 3.33 | -0.498 | 0.821 | -- | -2.56 | -- | -0.591 | 4.32 | -- | -- | -- | -- |
| 635.94 | 1.18 | 3.33 | -0.476 | 0.803 | -- | -- | -- | -0.577 | 3.81 | -- | -- | -- | -- |
| 493.58 | 1.03 | 3.28 | -0.349 | -- | 7.51 | -- | -- | -0.334 | -- | 94.84 | 375 | 12.2 | -- |
| 487.96 | 1.03 | 3.29 | -- | 0.4 | 7.34 | -- | -- | -0.348 | 2.66 | 94.88 | 379 | 12.3 | -- |
| 671.47 | 1.21 | 3.33 | -0.443 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 641.92 | 1.19 | 3.32 | -- | 0.794 | -- | -- | -- | -0.524 | 3.81 | -- | -- | -- | -- |
| 496.56 | 1.04 | 3.27 | -- | -- | 7.62 | -- | -- | -0.305 | -- | 94.85 | 371 | 12.2 | -- |
| 676.65 | 1.21 | 3.32 | -- | -- | -- | -- | -- | -0.506 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 479.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 2 | 479.37 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 5 | 498.13 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 6 | 498.13 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 7 | 502.29 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 8 | 502.63 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 504.05 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 13 | 508.31 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 17 | 510.14 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 18 | 510.44 | wind | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 19 | 511.45 | wind | 1.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 26 | 515.13 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 30 | 515.89 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 36 | 516.59 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 39 | 517.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 40 | 517.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 43 | 517.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 62 | 520.85 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 80 | 522.59 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 115 | 526.56 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 5 |
| 127 | 529.11 | wind | 1.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 128 | 529.72 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 149 | 532.55 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 7 |
| 152 | 533.09 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 1 |
| 164 | 534.68 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 176 | 535.63 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 188 | 536.71 | wind | 1.0 | 270 | < th | dose independent | rect. | 17 | 11 |
| 191 | 536.84 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 193 | 536.84 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 195 | 536.84 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 246 | 536.84 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 248 | 536.84 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 250 | 536.84 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 330 | 537.49 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 372 | 537.93 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 3 |
| 393 | 538.36 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 396 | 538.63 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 397 | 538.73 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 412 | 539.82 | wind | 1.0 | 270 | > th | dose independent | sin | 14 | NA |
| 423 | 540.56 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 446 | 541.78 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 461 | 542.80 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 532 | 545.91 | temperature | 20.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 545 | 546.49 | temperature | 20.0 | 90 | > th | dose independent | rect. | 12 | 20 |
| 549 | 546.73 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 596 | 548.76 | wind | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 600 | 548.85 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 616 | 549.37 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 640 | 549.94 | wind | 1.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 642 | 550.00 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 691 | 550.32 | wind | 1.0 | 270 | < th | dose independent | sin | 15 | NA |
| 694 | 550.36 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 695 | 550.36 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 696 | 550.39 | wind | 1.0 | 270 | < th | dose dependent | rect. | 23 | 5 |
| 702 | 550.68 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 775 | 551.84 | humidity | 90.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 779 | 551.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 18 | 10 |
| 820 | 552.31 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 832 | 552.51 | precipitation | 0.1 | 30 | < th | dose independent | sin | 3 | NA |
| 834 | 552.51 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 3 | NA |
| 887 | 553.51 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 3 | NA |
| 894 | 553.63 | wind | 1.0 | 270 | < th | dose dependent | rect. | 16 | 12 |
| 925 | 553.97 | precipitation | 0.1 | 30 | > th | dose independent | sin | 3 | NA |
| 930 | 554.00 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 15 | NA |
| 972 | 554.50 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 973 | 554.50 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 984 | 554.59 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 12 |
| 989 | 554.66 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 15 | NA |
| 1000 | 554.79 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |