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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0233800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF547 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0411) R2 : 0.00201
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.083 (0.0866) R2dN8 : 0.0026 R2N8 : 0.00201
σ : 0.774
deviance : 275.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
245.18 0.736 3.38 0.372 0.0513 14.7 -0.155 30.5 -0.0537 20.1 0.8867 114 8.02 3.97
263.69 0.762 3.23 -0.0678 0.00653 3.33 -0.112 -- -0.0815 9.98 0.0003673 43 8.75 4.3
245.25 0.729 3.38 0.374 0.0516 14.7 -- 30.5 -0.055 19.8 0.8823 113 8.04 3.96
252.36 0.74 3.23 -0.0226 0.0268 3.37 -- -- -0.0656 21 0.0005344 56 8.52 4.23
245.39 0.73 3.38 0.37 -- 14.7 -- 30.4 -0.0556 -- 0.8747 114 8.04 3.97
274.55 0.777 3.23 -0.108 0.041 -- -0.201 -- -0.0945 12.1 -- -- -- --
274.71 0.776 3.23 -0.115 0.0454 -- -- -- -0.095 13.6 -- -- -- --
252.4 0.74 3.22 -0.0251 -- 3.38 -- -- -0.0665 -- 0.0003411 56 8.5 4.23
252.35 0.74 3.22 -- 0.0348 3.39 -- -- -0.0632 18.6 0.1731 57 8.54 4.21
274.83 0.775 3.23 -0.117 -- -- -- -- -0.096 -- -- -- -- --
275.06 0.776 3.23 -- 0.0475 -- -- -- -0.0822 13.7 -- -- -- --
252.41 0.74 3.22 -- -- 3.38 -- -- -0.064 -- 0.2273 57 8.55 4.2
275.19 0.774 3.23 -- -- -- -- -- -0.083 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.33 radiation 1.0 90 < th dose independent rect. 8 4
2 252.33 radiation 1.0 90 < th dose dependent rect. 8 4
7 253.70 radiation 1.0 90 < th dose independent rect. 14 1
8 253.70 radiation 1.0 90 < th dose dependent rect. 14 1
9 253.97 radiation 1.0 270 < th dose independent rect. 9 1
10 253.97 radiation 1.0 270 < th dose dependent rect. 9 1
11 254.07 radiation 1.0 720 > th dose independent rect. 4 1
21 254.07 radiation 1.0 720 > th dose dependent rect. 4 1
35 255.91 atmosphere 1010.0 30 < th dose independent rect. 9 1
40 256.46 temperature 20.0 30 > th dose independent rect. 9 1
49 257.68 wind 1.0 10 > th dose independent rect. 10 23
50 257.90 atmosphere 1015.0 30 < th dose dependent rect. 9 1
56 258.39 temperature 15.0 30 > th dose dependent rect. 9 1
59 258.49 radiation 1.0 30 > th dose independent rect. 10 23
68 258.90 radiation 1.0 4320 > th dose independent rect. 9 1
75 259.27 radiation 10.0 10 > th dose independent rect. 9 1
76 259.34 temperature 25.0 90 < th dose independent rect. 8 1
79 259.65 radiation 1.0 14400 < th dose dependent rect. 3 1
80 259.73 wind 9.0 30 < th dose independent rect. 10 23
83 259.97 radiation 1.0 4320 < th dose independent rect. 9 1
84 259.97 radiation 1.0 4320 < th dose dependent rect. 9 1
85 260.10 radiation 1.0 270 < th dose independent rect. 11 1
86 260.10 radiation 1.0 270 < th dose dependent rect. 11 1
88 260.17 radiation 1.0 10 > th dose dependent rect. 9 1
90 260.20 radiation 1.0 90 < th dose dependent rect. 8 8
92 260.34 radiation 1.0 270 < th dose independent rect. 8 7
94 260.37 humidity 60.0 14400 > th dose independent rect. 6 2
95 260.40 temperature 10.0 1440 > th dose independent rect. 10 1
98 260.40 atmosphere 995.0 1440 > th dose independent rect. 10 1
101 260.40 temperature 10.0 1440 > th dose independent rect. 11 23
105 260.44 atmosphere 1000.0 30 > th dose independent rect. 9 1
108 260.50 wind 9.0 30 < th dose independent rect. 9 1
109 260.50 temperature 10.0 30 > th dose independent rect. 9 1
111 260.50 humidity 50.0 30 > th dose independent rect. 9 1
115 260.50 precipitation 0.1 30 < th dose independent rect. 9 1
116 260.50 temperature 10.0 30 > th dose independent rect. 10 23
117 260.50 precipitation 0.1 30 < th dose dependent rect. 9 1
119 260.53 atmosphere 995.0 30 > th dose independent rect. 10 23
120 260.57 humidity 90.0 30 < th dose independent rect. 9 1
132 260.72 precipitation 0.1 30 < th dose independent rect. 10 23
134 260.72 precipitation 0.1 30 < th dose dependent rect. 10 23
138 260.87 wind 1.0 30 > th dose independent rect. 9 1
148 261.07 radiation 1.0 1440 > th dose independent rect. 11 1
156 261.30 wind 1.0 30 < th dose independent rect. 2 1
157 261.32 wind 3.0 10 < th dose dependent rect. 2 1
166 261.41 temperature 20.0 30 > th dose independent rect. 2 1
173 261.45 temperature 15.0 30 > th dose dependent rect. 2 1
181 261.50 humidity 80.0 30 > th dose independent rect. 2 1
184 261.50 atmosphere 1005.0 30 > th dose dependent rect. 2 1
185 261.52 humidity 80.0 30 > th dose dependent rect. 2 1
188 261.54 humidity 50.0 30 > th dose dependent rect. 2 1
192 261.55 temperature 10.0 30 > th dose independent rect. 2 1
194 261.55 temperature 30.0 30 < th dose independent rect. 2 1
195 261.55 humidity 50.0 30 > th dose independent rect. 2 1
198 261.55 atmosphere 995.0 30 > th dose independent rect. 2 1
199 261.55 atmosphere 1010.0 30 < th dose independent rect. 2 1
201 261.55 radiation 1.0 30 < th dose independent rect. 2 1
206 261.55 precipitation 0.1 30 < th dose independent rect. 2 1
208 261.55 temperature 10.0 30 > th dose independent rect. 3 23
209 261.55 radiation 1.0 30 < th dose dependent rect. 2 1
214 261.55 precipitation 0.1 30 < th dose dependent rect. 2 1
217 261.56 atmosphere 1005.0 30 > th dose independent rect. 2 1
218 261.56 temperature 30.0 30 < th dose independent rect. 10 23
224 261.62 atmosphere 1015.0 30 < th dose dependent rect. 2 1
227 261.65 radiation 1.0 1440 > th dose independent rect. 9 3
241 261.78 radiation 1.0 10 < th dose dependent rect. 11 5
246 261.86 wind 3.0 90 > th dose independent rect. 2 3
251 261.95 temperature 30.0 30 < th dose dependent rect. 2 1
254 261.97 humidity 60.0 14400 < th dose independent rect. 6 1
256 261.97 humidity 60.0 14400 < th dose independent rect. 20 1
258 261.97 radiation 20.0 14400 > th dose independent rect. 17 1
309 261.97 wind 9.0 90 > th dose dependent sin 10 NA
310 261.97 humidity 60.0 14400 < th dose dependent rect. 6 1
312 261.97 humidity 60.0 14400 < th dose dependent rect. 20 1
314 261.97 radiation 20.0 14400 > th dose dependent rect. 17 1
379 262.09 radiation 1.0 1440 < th dose independent rect. 11 1
381 262.09 radiation 1.0 1440 < th dose dependent rect. 11 1
382 262.10 wind 9.0 30 < th dose dependent rect. 9 1
392 262.15 wind 9.0 1440 < th dose independent rect. 3 1
393 262.15 temperature 10.0 1440 > th dose independent rect. 3 1
396 262.15 temperature 30.0 1440 < th dose independent rect. 3 1
400 262.15 humidity 50.0 1440 > th dose independent rect. 3 1
409 262.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
410 262.15 radiation 1.0 1440 < th dose independent rect. 3 1
430 262.15 temperature 10.0 1440 > th dose independent rect. 4 23
439 262.16 wind 7.0 10 < th dose independent rect. 3 23
443 262.22 wind 7.0 10 > th dose dependent rect. 19 3
453 262.26 atmosphere 995.0 30 > th dose independent rect. 3 23
510 262.44 wind 9.0 90 > th dose dependent rect. 17 17
511 262.45 humidity 70.0 90 > th dose dependent rect. 9 1
523 262.55 radiation 1.0 10 < th dose independent rect. 11 5
528 262.56 humidity 50.0 1440 > th dose independent rect. 10 1
537 262.59 humidity 80.0 90 > th dose independent rect. 8 8
553 262.68 radiation 10.0 10 < th dose dependent rect. 11 16
556 262.70 radiation 40.0 90 < th dose independent rect. 9 1
558 262.71 wind 9.0 90 < th dose independent sin 11 NA
561 262.75 temperature 25.0 90 < th dose independent rect. 7 9
564 262.76 humidity 80.0 90 > th dose independent rect. 8 2
584 262.87 radiation 1.0 10 < th dose independent rect. 6 21
586 262.91 wind 3.0 90 > th dose dependent rect. 2 3
599 263.06 humidity 50.0 30 > th dose independent rect. 10 23
600 263.09 radiation 1.0 10 < th dose independent rect. 11 16
606 263.11 wind 1.0 10 < th dose independent rect. 9 18
622 263.26 temperature 20.0 10 < th dose dependent rect. 12 8
623 263.27 temperature 20.0 30 < th dose independent rect. 15 5
625 263.27 temperature 20.0 10 < th dose dependent rect. 15 5
627 263.28 humidity 60.0 14400 > th dose independent rect. 22 10
632 263.29 humidity 70.0 10 > th dose dependent rect. 10 1
643 263.33 temperature 20.0 90 < th dose independent rect. 8 12
652 263.40 wind 7.0 10 < th dose independent sin 10 NA
655 263.41 wind 7.0 10 > th dose independent rect. 19 3
681 263.44 temperature 10.0 30 > th dose dependent rect. 10 23
682 263.45 wind 9.0 90 > th dose independent sin 11 NA
692 263.48 wind 7.0 1440 > th dose independent rect. 15 2
693 263.48 wind 7.0 1440 < th dose independent rect. 15 2
694 263.48 temperature 20.0 90 < th dose independent rect. 12 8
696 263.48 humidity 50.0 30 > th dose dependent rect. 9 1
699 263.50 radiation 1.0 10 < th dose independent rect. 7 5
702 263.50 radiation 1.0 10 < th dose dependent rect. 7 5
705 263.52 wind 1.0 10 < th dose independent sin 19 NA
717 263.56 wind 1.0 10 < th dose dependent rect. 9 9
722 263.57 radiation 1.0 270 < th dose independent rect. 11 4
727 263.59 temperature 25.0 270 < th dose independent rect. 5 11
728 263.59 wind 1.0 10 < th dose dependent rect. 9 6
733 263.61 radiation 10.0 30 < th dose dependent rect. 14 13
770 263.72 radiation 1.0 10 < th dose independent rect. 11 1
790 263.72 radiation 1.0 10 < th dose dependent rect. 11 1
820 263.75 radiation 10.0 30 < th dose independent rect. 14 13
826 263.77 humidity 70.0 10 > th dose independent rect. 10 1
840 263.81 humidity 70.0 10 > th dose independent rect. 9 18
843 263.82 radiation 10.0 720 < th dose independent rect. 1 6
845 263.82 wind 7.0 10 > th dose dependent sin 10 NA
849 263.84 wind 5.0 1440 > th dose dependent rect. 15 2
881 263.96 wind 7.0 90 > th dose dependent rect. 14 20
888 264.01 wind 1.0 30 > th dose dependent rect. 9 1
913 264.05 humidity 90.0 30 < th dose dependent rect. 9 1
935 264.15 wind 7.0 90 > th dose independent rect. 14 20
938 264.15 wind 9.0 90 > th dose dependent rect. 20 14
979 264.28 humidity 60.0 14400 > th dose independent rect. 24 8
985 264.30 precipitation 0.1 30 < th dose independent rect. 3 23
987 264.30 precipitation 0.1 30 < th dose dependent rect. 3 23
997 264.34 temperature 25.0 270 < th dose independent rect. 5 5