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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0233200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pathogenesis-related protein 5 precursor (PR-5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0286) R2 : 0.00195
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0569 (0.0602) R2dN8 : 0.00252 R2N8 : 0.00195
σ : 0.539
deviance : 133.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.82 0.519 3.07 -0.326 0.171 -0.587 -0.591 -0.733 0.0483 9.4 79 3782 -- --
122.07 0.515 3.08 -0.243 0.173 -0.611 -0.503 -- 0.0646 9.58 78 3678 -- --
122.6 0.516 3.06 -0.338 0.223 -0.586 -- -0.691 0.0859 9.58 75 4207 -- --
122.29 0.515 3.06 -0.321 0.238 -0.588 -- -- 0.125 9.74 75.7 7304 -- --
124.85 0.52 3.07 -0.334 -- -0.609 -- -0.123 0.087 -- 75 6580 -- --
127.36 0.529 3.11 -0.245 0.237 -- -0.459 -- -0.0864 9.34 -- -- -- --
128.11 0.53 3.11 -0.261 0.238 -- -- -- -0.0867 9.53 -- -- -- --
124.82 0.52 3.07 -0.315 -- -0.647 -- -- 0.112 -- 74 6580 -- --
124.91 0.521 3.06 -- 0.241 -0.535 -- -- 0.121 9.7 75 7292 -- --
131.45 0.536 3.11 -0.263 -- -- -- -- -0.086 -- -- -- -- --
129.9 0.533 3.1 -- 0.238 -- -- -- -0.0576 9.61 -- -- -- --
127.41 0.526 3.06 -- -- -0.607 -- -- 0.138 -- 74.42 6578 -- --
133.27 0.539 3.11 -- -- -- -- -- -0.0569 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.01 humidity 90.0 720 < th dose independent rect. 24 5
4 120.57 humidity 90.0 720 < th dose dependent rect. 24 2
6 120.70 precipitation 0.1 720 < th dose independent rect. 3 21
7 120.70 precipitation 0.1 720 < th dose dependent rect. 3 21
12 121.05 precipitation 0.1 720 < th dose independent rect. 12 17
13 121.05 precipitation 0.1 720 < th dose dependent rect. 12 17
14 121.07 precipitation 0.1 720 < th dose independent rect. 2 23
15 121.07 precipitation 0.1 720 < th dose dependent rect. 2 23
19 121.18 precipitation 0.1 720 < th dose independent rect. 9 15
20 121.18 temperature 30.0 90 < th dose dependent rect. 10 1
21 121.18 precipitation 0.1 720 < th dose dependent rect. 9 15
22 121.19 precipitation 0.1 720 < th dose independent rect. 12 8
24 121.19 precipitation 0.1 720 < th dose dependent rect. 12 8
26 121.19 temperature 10.0 30 > th dose dependent rect. 12 23
27 121.20 temperature 10.0 270 > th dose dependent rect. 3 13
28 121.20 temperature 10.0 30 > th dose dependent rect. 3 23
29 121.21 atmosphere 1005.0 10 > th dose dependent rect. 1 2
32 121.25 temperature 15.0 720 > th dose independent rect. 12 3
34 121.26 radiation 40.0 10 < th dose independent rect. 12 1
39 121.34 temperature 10.0 720 > th dose dependent rect. 3 4
41 121.35 radiation 40.0 90 < th dose independent rect. 11 1
43 121.35 temperature 15.0 90 > th dose independent rect. 12 13
45 121.38 wind 1.0 10 > th dose independent rect. 12 23
49 121.45 atmosphere 1005.0 720 > th dose independent rect. 24 2
50 121.48 precipitation 0.1 720 < th dose independent rect. 12 19
51 121.48 precipitation 0.1 720 < th dose dependent rect. 12 19
52 121.49 temperature 15.0 90 > th dose independent rect. 12 23
53 121.49 precipitation 0.1 720 < th dose independent rect. 12 23
54 121.49 precipitation 0.1 720 < th dose dependent rect. 12 23
67 121.61 atmosphere 995.0 30 > th dose dependent rect. 11 1
75 121.69 humidity 90.0 720 < th dose independent rect. 12 2
81 121.72 radiation 40.0 10 < th dose dependent rect. 12 1
85 121.73 atmosphere 1000.0 30 > th dose independent rect. 11 1
89 121.74 radiation 1.0 30 > th dose independent rect. 12 23
92 121.77 precipitation 0.1 1440 < th dose independent rect. 6 12
94 121.77 precipitation 0.1 1440 < th dose dependent rect. 6 12
99 121.79 temperature 30.0 270 < th dose dependent rect. 7 5
103 121.84 precipitation 0.1 720 < th dose independent rect. 23 16
104 121.84 precipitation 0.1 720 < th dose dependent rect. 23 16
113 121.89 temperature 30.0 720 < th dose dependent rect. 1 1
117 121.91 precipitation 0.1 90 < th dose independent rect. 12 23
121 121.91 humidity 90.0 720 < th dose dependent rect. 24 6
122 121.91 precipitation 0.1 90 < th dose dependent rect. 12 23
127 121.93 temperature 25.0 10 > th dose dependent rect. 12 23
133 121.95 precipitation 0.1 1440 > th dose independent rect. 6 12
142 122.01 humidity 80.0 4320 < th dose independent rect. 17 10
151 122.05 wind 1.0 720 > th dose independent rect. 12 3
155 122.06 atmosphere 1005.0 90 > th dose independent rect. 1 11
160 122.07 temperature 10.0 90 > th dose dependent rect. 12 13
162 122.08 temperature 25.0 270 < th dose dependent rect. 8 1
163 122.09 humidity 60.0 14400 < th dose independent rect. 16 2
167 122.10 precipitation 0.1 1440 > th dose independent rect. 16 1
173 122.11 humidity 90.0 14400 < th dose independent rect. 19 4
176 122.12 temperature 15.0 720 > th dose independent rect. 3 21
178 122.13 precipitation 0.1 1440 < th dose independent rect. 16 1
183 122.13 precipitation 0.1 1440 < th dose dependent rect. 16 1
189 122.14 radiation 10.0 14400 > th dose independent rect. 17 1
202 122.14 temperature 25.0 30 > th dose independent rect. 12 23
216 122.16 temperature 30.0 270 < th dose dependent rect. 7 12
222 122.19 temperature 10.0 1440 > th dose independent rect. 12 1
226 122.19 atmosphere 995.0 1440 > th dose independent rect. 12 1
227 122.19 precipitation 0.1 720 < th dose independent rect. 17 7
229 122.19 temperature 10.0 1440 > th dose independent rect. 13 23
233 122.19 precipitation 0.1 720 < th dose dependent rect. 17 7
239 122.21 precipitation 0.1 1440 > th dose dependent rect. 16 1
244 122.22 radiation 1.0 30 > th dose independent rect. 11 1
245 122.22 wind 1.0 720 > th dose independent rect. 12 8
247 122.23 temperature 10.0 30 > th dose independent rect. 11 1
250 122.23 atmosphere 1015.0 30 < th dose independent rect. 11 1
251 122.23 precipitation 0.1 30 < th dose independent rect. 11 1
254 122.23 precipitation 0.1 90 < th dose independent rect. 12 13
257 122.23 precipitation 0.1 30 < th dose dependent rect. 11 1
259 122.23 precipitation 0.1 90 < th dose dependent rect. 12 13
261 122.24 humidity 90.0 720 > th dose independent rect. 3 1
263 122.24 temperature 30.0 720 < th dose independent rect. 24 9
270 122.26 humidity 80.0 4320 < th dose independent rect. 16 18
278 122.28 humidity 80.0 4320 < th dose independent sin 13 NA
279 122.28 humidity 90.0 14400 > th dose independent rect. 19 3
283 122.28 temperature 10.0 720 > th dose dependent rect. 3 6
285 122.29 wind 9.0 30 < th dose independent rect. 11 1
292 122.30 wind 1.0 30 > th dose independent rect. 11 1
300 122.31 precipitation 0.1 720 < th dose independent rect. 3 8
302 122.31 humidity 80.0 4320 < th dose dependent sin 12 NA
304 122.31 precipitation 0.1 720 < th dose dependent rect. 3 8
322 122.32 temperature 30.0 90 < th dose dependent rect. 10 9
331 122.33 radiation 20.0 10 < th dose independent rect. 23 12
335 122.33 humidity 60.0 14400 > th dose dependent rect. 17 1
338 122.34 temperature 20.0 720 > th dose independent rect. 4 2
339 122.34 humidity 60.0 14400 > th dose independent rect. 16 2
342 122.34 precipitation 0.1 1440 < th dose independent rect. 24 18
349 122.34 precipitation 0.1 1440 < th dose dependent rect. 24 18
362 122.35 precipitation 0.1 720 < th dose independent rect. 12 12
369 122.35 humidity 50.0 720 > th dose dependent rect. 19 5
370 122.35 precipitation 0.1 720 < th dose dependent rect. 12 12
371 122.35 atmosphere 995.0 30 > th dose dependent rect. 11 16
385 122.39 humidity 50.0 10 > th dose independent rect. 11 1
392 122.39 humidity 80.0 14400 > th dose dependent rect. 19 1
393 122.39 temperature 10.0 720 > th dose dependent rect. 12 3
404 122.40 wind 9.0 30 < th dose independent rect. 12 23
405 122.40 humidity 50.0 720 > th dose dependent rect. 21 10
411 122.41 precipitation 0.1 1440 > th dose independent rect. 2 16
413 122.41 temperature 15.0 90 > th dose independent rect. 3 22
423 122.42 humidity 80.0 14400 > th dose dependent rect. 18 4
426 122.43 precipitation 0.1 720 < th dose independent rect. 12 3
427 122.43 humidity 70.0 4320 < th dose independent rect. 12 5
431 122.43 humidity 80.0 14400 > th dose dependent rect. 21 1
434 122.43 precipitation 0.1 720 < th dose dependent rect. 12 3
441 122.44 humidity 80.0 4320 > th dose independent rect. 17 10
442 122.44 humidity 60.0 14400 > th dose independent rect. 16 13
451 122.44 humidity 90.0 14400 < th dose dependent rect. 16 2
477 122.46 precipitation 0.1 1440 < th dose independent rect. 6 19
483 122.46 humidity 80.0 4320 < th dose dependent rect. 15 16
484 122.46 precipitation 0.1 1440 < th dose dependent rect. 6 19
497 122.48 humidity 70.0 4320 > th dose independent rect. 13 4
503 122.48 radiation 40.0 90 < th dose independent rect. 10 17
509 122.49 precipitation 0.1 1440 < th dose independent rect. 9 9
518 122.49 precipitation 0.1 1440 < th dose dependent rect. 9 9
539 122.50 temperature 25.0 30 < th dose dependent rect. 2 1
552 122.51 temperature 30.0 720 < th dose independent rect. 7 5
579 122.53 humidity 80.0 4320 > th dose independent rect. 17 17
584 122.53 atmosphere 995.0 30 > th dose independent rect. 12 23
602 122.54 radiation 1.0 720 < th dose dependent rect. 24 14
616 122.55 atmosphere 995.0 90 > th dose dependent rect. 1 11
623 122.56 wind 7.0 720 < th dose independent rect. 24 3
644 122.57 humidity 70.0 4320 < th dose independent rect. 12 2
651 122.57 temperature 15.0 10 > th dose independent rect. 3 23
679 122.59 humidity 70.0 4320 > th dose independent rect. 9 8
703 122.60 precipitation 0.1 1440 < th dose independent rect. 6 16
712 122.60 humidity 90.0 1440 > th dose dependent rect. 7 12
713 122.60 precipitation 0.1 1440 < th dose dependent rect. 6 16
730 122.61 humidity 70.0 720 > th dose dependent rect. 23 1
749 122.62 humidity 70.0 4320 < th dose independent rect. 9 8
774 122.63 radiation 10.0 720 < th dose independent rect. 21 9
778 122.63 atmosphere 1005.0 90 > th dose independent rect. 18 18
798 122.64 precipitation 0.1 720 < th dose independent rect. 3 12
804 122.64 humidity 80.0 4320 < th dose dependent rect. 18 9
806 122.64 precipitation 0.1 720 < th dose dependent rect. 3 12
810 122.65 temperature 10.0 720 > th dose independent rect. 24 3
811 122.65 temperature 30.0 720 < th dose independent rect. 24 3
812 122.65 humidity 50.0 720 > th dose independent rect. 24 3
815 122.65 atmosphere 995.0 720 > th dose independent rect. 24 3
816 122.65 radiation 1.0 720 < th dose independent rect. 24 3
829 122.65 humidity 50.0 10 > th dose independent rect. 12 23
831 122.65 radiation 1.0 720 < th dose dependent rect. 24 3
841 122.65 humidity 80.0 4320 < th dose dependent rect. 17 14
842 122.66 humidity 80.0 4320 > th dose independent sin 13 NA
848 122.66 temperature 30.0 720 < th dose independent rect. 24 12
851 122.66 precipitation 0.1 1440 > th dose independent rect. 6 19
855 122.66 wind 1.0 10 > th dose dependent rect. 11 1
856 122.66 humidity 50.0 1440 > th dose dependent rect. 21 1
870 122.67 temperature 10.0 90 > th dose independent rect. 1 11
871 122.67 atmosphere 995.0 90 > th dose independent rect. 1 11
872 122.67 atmosphere 1015.0 90 < th dose independent rect. 1 11
887 122.68 humidity 60.0 14400 < th dose independent sin 13 NA
889 122.68 precipitation 0.1 1440 < th dose independent rect. 13 5
903 122.68 precipitation 0.1 1440 < th dose dependent rect. 13 5
916 122.69 atmosphere 1015.0 720 < th dose independent rect. 12 3
923 122.69 precipitation 0.1 1440 > th dose independent rect. 6 16
927 122.69 temperature 10.0 720 > th dose independent rect. 15 21
929 122.69 humidity 80.0 4320 < th dose dependent rect. 21 1
941 122.70 precipitation 0.1 720 < th dose independent rect. 24 3
949 122.70 atmosphere 1000.0 30 > th dose independent rect. 11 16
950 122.70 humidity 90.0 14400 < th dose independent rect. 5 18
951 122.70 temperature 30.0 720 < th dose independent rect. 19 20
952 122.70 humidity 80.0 4320 < th dose independent rect. 7 20
956 122.70 precipitation 0.1 720 < th dose dependent rect. 24 3
963 122.70 radiation 1.0 720 < th dose dependent rect. 24 11
991 122.71 humidity 50.0 14400 > th dose dependent rect. 15 8
994 122.71 humidity 60.0 4320 > th dose dependent rect. 9 14
997 122.71 radiation 40.0 90 < th dose dependent rect. 10 17
998 122.71 temperature 15.0 270 > th dose dependent rect. 3 19