Os03g0232500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding protein, HSR1-related domain containing protein.
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Os03g0232500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP-binding protein, HSR1-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.18 | 0.298 | 10.8 | 0.417 | 0.791 | -1.73 | 0.388 | -4.04 | -0.328 | 22.1 | 0.5212 | 1450 | -- | -- |
| 44 | 0.309 | 10.9 | 0.0341 | 0.731 | -0.822 | 0.286 | -- | -0.384 | 22.1 | 2.69 | 1426 | -- | -- |
| 40.6 | 0.297 | 10.8 | 0.404 | 0.722 | -1.76 | -- | -4.11 | -0.335 | 22 | 0.44 | 1433 | -- | -- |
| 43.95 | 0.309 | 10.9 | 0.0436 | 0.467 | -0.983 | -- | -- | -0.401 | 21.5 | 2.808 | 1327 | -- | -- |
| 50.04 | 0.329 | 10.8 | 0.357 | -- | -1.91 | -- | -3.89 | -0.35 | -- | 0.3258 | 2648 | -- | -- |
| 52.87 | 0.341 | 10.9 | 0.232 | 0.759 | -- | 0.371 | -- | -0.283 | 22.2 | -- | -- | -- | -- |
| 53.42 | 0.342 | 10.9 | 0.217 | 0.757 | -- | -- | -- | -0.284 | 22.2 | -- | -- | -- | -- |
| 45.52 | 0.314 | 10.9 | 0.0425 | -- | -1.43 | -- | -- | -0.433 | -- | 2.933 | 1205 | -- | -- |
| 43.78 | 0.308 | 10.9 | -- | 0.482 | -0.998 | -- | -- | -0.408 | 21.9 | 2.84 | 1327 | -- | -- |
| 88.21 | 0.439 | 10.9 | 0.228 | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
| 54.66 | 0.346 | 10.9 | -- | 0.758 | -- | -- | -- | -0.308 | 22.3 | -- | -- | -- | -- |
| 45.58 | 0.314 | 10.9 | -- | -- | -1.44 | -- | -- | -0.432 | -- | 2.855 | 1207 | -- | -- |
| 89.58 | 0.442 | 10.9 | -- | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 2 | 38.09 | humidity | 50 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 6 | 38.14 | humidity | 60 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 12 | 38.20 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 13 | 38.22 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 21 | 38.23 | humidity | 70 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 31 | 38.31 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 47 | 38.36 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 59 | 38.38 | humidity | 90 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 61 | 38.39 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 63 | 38.40 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 113 | 38.49 | humidity | 70 | 14400 | > th | dose independent | sin | 13 | NA |
| 150 | 38.64 | humidity | 70 | 14400 | < th | dose independent | sin | 13 | NA |
| 222 | 38.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 278 | 39.00 | humidity | 80 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 301 | 39.03 | humidity | 50 | 14400 | > th | dose dependent | sin | 15 | NA |
| 359 | 39.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 361 | 39.15 | humidity | 90 | 14400 | < th | dose dependent | sin | 16 | NA |
| 382 | 39.17 | humidity | 50 | 14400 | > th | dose dependent | rect. | 14 | 18 |
| 426 | 39.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 478 | 39.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 656 | 39.55 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 698 | 39.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 14 |
| 701 | 39.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 14 |
| 811 | 39.73 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 21 |
| 814 | 39.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 820 | 39.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 826 | 39.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 836 | 39.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 925 | 39.82 | humidity | 60 | 14400 | > th | dose dependent | rect. | 5 | 21 |
| 930 | 39.83 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 13 |
| 989 | 39.87 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 996 | 39.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 23 |