Os03g0231400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0231400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.09 | 0.388 | 11.8 | -0.0333 | 1.33 | 1.06 | 0.362 | -3.85 | -0.112 | 4.04 | 26.4 | 1651 | -- | -- |
| 71.05 | 0.393 | 11.7 | 0.847 | 1.3 | 0.657 | 0.358 | -- | 0.0683 | 4.03 | 26.2 | 1650 | -- | -- |
| 68.46 | 0.385 | 11.8 | -0.0658 | 1.33 | 1.08 | -- | -4.01 | -0.114 | 4.04 | 26.52 | 1658 | -- | -- |
| 71.48 | 0.394 | 11.7 | 0.838 | 1.3 | 0.66 | -- | -- | 0.069 | 4.02 | 26.2 | 1648 | -- | -- |
| 151.1 | 0.573 | 11.8 | 0.321 | -- | 0.973 | -- | -1.51 | -0.0995 | -- | 24 | 2706 | -- | -- |
| 86.14 | 0.435 | 11.7 | 1.05 | 1.29 | -- | 0.451 | -- | 0.105 | 3.92 | -- | -- | -- | -- |
| 86.73 | 0.436 | 11.7 | 1.04 | 1.29 | -- | -- | -- | 0.103 | 3.91 | -- | -- | -- | -- |
| 151.61 | 0.573 | 11.8 | 0.792 | -- | 0.809 | -- | -- | 0.00514 | -- | 23.7 | 2665 | -- | -- |
| 88.5 | 0.438 | 11.7 | -- | 1.21 | 0.771 | -- | -- | -0.038 | 4.06 | 25.82 | 1331 | -- | -- |
| 177.58 | 0.623 | 11.7 | 1.09 | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
| 115.3 | 0.502 | 11.8 | -- | 1.31 | -- | -- | -- | -0.0134 | 3.9 | -- | -- | -- | -- |
| 161.81 | 0.592 | 11.8 | -- | -- | 1.11 | -- | -- | -0.126 | -- | 23.9 | 1230 | -- | -- |
| 209.16 | 0.675 | 11.8 | -- | -- | -- | -- | -- | 0.0155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 10 | 64.56 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 21 | 65.36 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 74 | 66.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 121 | 67.48 | humidity | 50 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 160 | 68.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 165 | 68.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 214 | 68.52 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 19 |
| 232 | 68.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 257 | 68.78 | radiation | 1 | 270 | < th | dose dependent | sin | 20 | NA |
| 268 | 68.85 | temperature | 30 | 30 | < th | dose independent | rect. | 6 | 21 |
| 274 | 68.87 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 283 | 68.94 | radiation | 1 | 270 | > th | dose independent | sin | 19 | NA |
| 286 | 68.97 | radiation | 1 | 270 | < th | dose independent | sin | 19 | NA |
| 303 | 69.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 306 | 69.02 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 317 | 69.05 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 327 | 69.07 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 396 | 69.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 14 |
| 407 | 69.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 420 | 69.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 463 | 69.28 | humidity | 60 | 270 | > th | dose independent | rect. | 5 | 19 |
| 528 | 69.36 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 529 | 69.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 540 | 69.37 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 542 | 69.37 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 566 | 69.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 585 | 69.45 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 621 | 69.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 639 | 69.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 10 |
| 653 | 69.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 666 | 69.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 667 | 69.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 669 | 69.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 687 | 69.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 698 | 69.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 734 | 69.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 776 | 69.85 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 777 | 69.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 778 | 69.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 786 | 69.88 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 18 | 6 |
| 794 | 69.89 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 797 | 69.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 804 | 69.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 806 | 69.92 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 813 | 69.94 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 848 | 69.99 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 850 | 69.99 | temperature | 25 | 10 | > th | dose dependent | sin | 17 | NA |
| 865 | 70.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 872 | 70.03 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 876 | 70.04 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 881 | 70.05 | temperature | 30 | 1440 | < th | dose independent | sin | 3 | NA |
| 886 | 70.05 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 893 | 70.06 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 918 | 70.09 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 924 | 70.10 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 948 | 70.13 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 7 |
| 954 | 70.13 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 996 | 70.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 14 |