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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0231000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0333) R2 : 0.0319
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0701) R2dN8 : 0.0412 R2N8 : 0.0319
σ : 0.627
deviance : 180.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.43 0.601 3.72 1.29 0.0177 -0.102 -1.01 3.31 0.584 10.8 19.09 5136 -- --
171.96 0.615 3.85 0.389 0.0632 -0.286 -1.1 -- 0.346 10.8 -11.53 47520 -- --
167.58 0.603 3.71 1.27 0.0282 -0.0853 -- 3.42 0.584 10.5 18.79 5214 -- --
176.71 0.623 3.85 0.358 0.119 -0.317 -- -- 0.357 13.7 18.79 5214 -- --
167.61 0.603 3.71 1.28 -- -0.0855 -- 3.46 0.591 -- 18.9 5215 -- --
172.97 0.617 3.86 0.336 0.0123 -- -1.11 -- 0.307 10.8 -- -- -- --
178.14 0.625 3.86 0.29 0.0201 -- -- -- 0.304 9.18 -- -- -- --
177.19 0.623 3.85 0.338 -- -0.261 -- -- 0.339 -- 8.318 43388 -- --
179.38 0.624 3.88 -- 0.0219 0.16 -- -- 0.224 9.32 0.7887 47520 -- --
178.17 0.624 3.86 0.29 -- -- -- -- 0.304 -- -- -- -- --
180.36 0.628 3.87 -- 0.021 -- -- -- 0.271 8.12 -- -- -- --
177.16 0.62 3.87 -- -- 0.165 -- -- 0.246 -- 33.9 47520 -- --
180.39 0.627 3.87 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.77 temperature 20.0 10 > th dose dependent rect. 2 1
2 157.90 humidity 80.0 30 > th dose independent rect. 2 1
4 158.09 wind 3.0 30 < th dose dependent rect. 2 1
6 158.19 wind 1.0 30 < th dose independent rect. 2 1
7 158.22 humidity 80.0 30 > th dose dependent rect. 2 1
11 158.30 temperature 20.0 30 > th dose independent rect. 2 1
17 158.44 atmosphere 1015.0 30 < th dose dependent rect. 2 1
18 158.48 atmosphere 1005.0 30 > th dose independent rect. 2 1
19 158.53 wind 9.0 30 < th dose independent rect. 2 1
20 158.53 temperature 10.0 30 > th dose independent rect. 2 1
22 158.53 temperature 30.0 30 < th dose independent rect. 2 1
23 158.53 humidity 50.0 30 > th dose independent rect. 2 1
26 158.53 atmosphere 995.0 30 > th dose independent rect. 2 1
27 158.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 158.53 radiation 1.0 30 < th dose independent rect. 2 1
34 158.53 precipitation 0.1 30 < th dose independent rect. 2 1
35 158.53 temperature 10.0 30 > th dose independent rect. 3 23
36 158.53 radiation 1.0 30 < th dose dependent rect. 2 1
41 158.53 precipitation 0.1 30 < th dose dependent rect. 2 1
47 158.66 atmosphere 1000.0 30 > th dose dependent rect. 2 1
55 159.15 temperature 15.0 270 > th dose independent rect. 3 10
59 159.45 temperature 30.0 30 < th dose dependent rect. 2 1
66 159.74 atmosphere 995.0 270 > th dose independent rect. 13 14
72 159.97 wind 1.0 30 > th dose independent rect. 2 1
74 160.11 humidity 60.0 270 > th dose independent rect. 3 10
101 160.22 wind 7.0 270 < th dose independent rect. 3 10
102 160.48 temperature 10.0 270 > th dose dependent rect. 3 10
103 160.52 atmosphere 995.0 270 > th dose independent rect. 23 18
107 161.03 wind 9.0 270 < th dose independent rect. 13 14
110 161.21 temperature 20.0 14400 < th dose independent rect. 23 1
112 161.21 atmosphere 995.0 270 > th dose independent rect. 3 10
113 161.21 atmosphere 1015.0 270 < th dose independent rect. 3 10
114 161.21 temperature 10.0 270 > th dose independent rect. 13 14
116 161.31 wind 9.0 30 < th dose independent rect. 3 23
117 161.33 wind 5.0 43200 > th dose independent rect. 11 1
118 161.33 wind 5.0 43200 < th dose independent rect. 11 1
119 161.33 precipitation 0.1 270 < th dose independent rect. 3 10
120 161.33 precipitation 0.1 270 < th dose dependent rect. 3 10
121 161.43 radiation 10.0 4320 < th dose dependent rect. 3 2
122 161.45 radiation 10.0 4320 < th dose dependent rect. 1 4
124 161.47 atmosphere 995.0 90 > th dose independent rect. 1 16
125 161.51 radiation 10.0 4320 < th dose independent rect. 3 2
126 161.53 temperature 20.0 14400 > th dose independent rect. 23 1
129 161.64 radiation 30.0 4320 > th dose dependent rect. 16 17
130 161.65 atmosphere 995.0 270 > th dose independent rect. 22 20
133 161.67 radiation 30.0 4320 > th dose dependent rect. 7 2
149 161.69 radiation 40.0 14400 < th dose dependent rect. 3 2
165 161.70 radiation 40.0 4320 < th dose independent rect. 22 11
167 161.70 radiation 40.0 4320 < th dose independent rect. 19 14
169 161.71 radiation 40.0 4320 < th dose independent rect. 6 3
185 161.79 radiation 30.0 4320 > th dose independent rect. 7 2
189 161.79 radiation 10.0 4320 < th dose independent rect. 1 4
218 161.83 wind 5.0 43200 > th dose independent rect. 8 6
223 161.85 wind 5.0 43200 > th dose dependent rect. 10 2
231 161.89 wind 5.0 43200 < th dose independent rect. 8 6
238 161.91 temperature 10.0 10 > th dose dependent rect. 5 9
244 161.93 wind 5.0 43200 > th dose dependent rect. 8 6
262 162.01 humidity 90.0 43200 > th dose independent rect. 9 2
263 162.01 radiation 40.0 14400 < th dose dependent rect. 1 4
278 162.06 humidity 90.0 43200 < th dose independent rect. 10 1
279 162.06 temperature 20.0 14400 < th dose independent rect. 21 10
304 162.12 precipitation 0.1 43200 > th dose independent rect. 7 2
307 162.12 radiation 10.0 270 < th dose independent rect. 17 6
312 162.13 radiation 20.0 43200 < th dose independent rect. 1 5
314 162.14 temperature 20.0 14400 < th dose independent rect. 1 1
327 162.16 precipitation 0.1 43200 > th dose dependent rect. 7 2
328 162.16 temperature 20.0 270 > th dose dependent rect. 17 20
333 162.18 precipitation 0.1 270 < th dose independent rect. 17 6
335 162.18 humidity 90.0 43200 > th dose dependent rect. 9 2
337 162.18 precipitation 0.1 270 < th dose dependent rect. 17 6
354 162.22 wind 1.0 270 > th dose independent rect. 17 6
364 162.24 temperature 20.0 14400 > th dose independent rect. 21 10
388 162.28 temperature 20.0 14400 > th dose independent rect. 6 1
403 162.30 precipitation 0.1 43200 < th dose independent rect. 7 2
414 162.30 precipitation 0.1 43200 < th dose dependent rect. 7 2
416 162.31 temperature 10.0 270 > th dose independent rect. 17 6
423 162.31 temperature 10.0 270 > th dose independent rect. 23 18
457 162.37 humidity 50.0 270 > th dose independent rect. 17 6
465 162.38 wind 9.0 270 < th dose independent rect. 17 6
471 162.38 precipitation 0.1 270 < th dose independent rect. 23 18
472 162.38 precipitation 0.1 270 < th dose dependent rect. 23 18
494 162.41 precipitation 0.1 270 < th dose independent rect. 13 14
496 162.41 wind 5.0 43200 > th dose independent rect. 19 19
498 162.41 precipitation 0.1 270 < th dose dependent rect. 13 14
504 162.42 radiation 40.0 270 < th dose dependent rect. 17 6
539 162.46 wind 5.0 43200 < th dose independent rect. 19 19
566 162.48 wind 5.0 43200 > th dose dependent rect. 20 18
567 162.49 temperature 20.0 14400 < th dose independent rect. 6 1
595 162.51 wind 9.0 270 < th dose independent rect. 23 18
605 162.52 atmosphere 1015.0 270 < th dose independent rect. 23 18
619 162.54 wind 5.0 43200 > th dose independent sin 4 NA
620 162.54 temperature 20.0 14400 < th dose independent sin 10 NA
633 162.55 temperature 20.0 43200 < th dose independent sin 13 NA
661 162.57 temperature 20.0 43200 > th dose independent sin 13 NA
702 162.60 wind 5.0 43200 < th dose independent sin 4 NA
713 162.60 humidity 50.0 90 > th dose independent rect. 17 8
805 162.66 temperature 20.0 14400 > th dose independent sin 9 NA
866 162.68 wind 5.0 43200 > th dose dependent sin 5 NA
907 162.71 temperature 20.0 14400 > th dose independent rect. 4 4
947 162.73 temperature 25.0 270 > th dose independent rect. 24 2
964 162.74 temperature 20.0 14400 < th dose independent rect. 4 4