Os03g0230000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0230000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 272.91 | 0.776 | 3.86 | 0.553 | 0.416 | -1.05 | -0.0378 | -0.492 | 0.33 | 10.6 | 21.57 | 1392 | -- | -- |
| 273.44 | 0.77 | 3.85 | 0.687 | 0.416 | -1.02 | -0.0217 | -- | 0.359 | 10.6 | 21.5 | 1392 | -- | -- |
| 272.91 | 0.769 | 3.86 | 0.552 | 0.416 | -1.05 | -- | -0.488 | 0.33 | 10.6 | 21.58 | 1392 | -- | -- |
| 273.44 | 0.77 | 3.84 | 0.682 | 0.416 | -1.02 | -- | -- | 0.359 | 10.6 | 21.56 | 1392 | -- | -- |
| 280.87 | 0.781 | 3.86 | 0.529 | -- | -0.941 | -- | -0.198 | 0.344 | -- | 22 | 947 | -- | -- |
| 304.24 | 0.818 | 3.91 | 0.267 | 0.443 | -- | -0.0957 | -- | 0.0646 | 10.9 | -- | -- | -- | -- |
| 304.28 | 0.817 | 3.91 | 0.263 | 0.444 | -- | -- | -- | 0.0641 | 10.9 | -- | -- | -- | -- |
| 280.12 | 0.78 | 3.85 | 0.555 | -- | -0.901 | -- | -- | 0.373 | -- | 22.33 | 1028 | -- | -- |
| 281.2 | 0.781 | 3.86 | -- | 0.385 | -0.758 | -- | -- | 0.267 | 10.4 | 22.31 | 1263 | -- | -- |
| 316.49 | 0.831 | 3.92 | 0.254 | -- | -- | -- | -- | 0.0611 | -- | -- | -- | -- | -- |
| 306.1 | 0.818 | 3.92 | -- | 0.442 | -- | -- | -- | 0.0348 | 10.8 | -- | -- | -- | -- |
| 287.41 | 0.79 | 3.87 | -- | -- | -0.785 | -- | -- | 0.276 | -- | 22.31 | 900 | -- | -- |
| 318.18 | 0.833 | 3.93 | -- | -- | -- | -- | -- | 0.033 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 3 | 270.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 14 | 270.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 17 | 270.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 19 | 270.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 30 | 270.93 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 40 | 271.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 90 | 271.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 107 | 271.53 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 186 | 272.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 220 | 272.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 316 | 272.65 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 322 | 272.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 359 | 272.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 380 | 273.05 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 389 | 273.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 516 | 273.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 673 | 274.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 679 | 274.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 759 | 274.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 787 | 274.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 803 | 274.76 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 842 | 274.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 959 | 275.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |