Os03g0228900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0228900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.65 | 0.321 | 7.9 | -0.141 | 0.587 | -1.09 | -1.61 | -1.44 | -0.227 | 14.8 | 25.7 | 29 | -- | -- |
| 49.12 | 0.329 | 7.93 | -0.367 | 0.616 | -0.979 | -1.09 | -- | -0.272 | 15 | 25.7 | 29 | -- | -- |
| 52.95 | 0.342 | 7.93 | -0.351 | 0.609 | -0.995 | -- | -0.257 | -0.27 | 15.1 | 25.7 | 29 | -- | -- |
| 53.06 | 0.341 | 7.93 | -0.391 | 0.618 | -0.977 | -- | -- | -0.277 | 15 | 25.6 | 22 | -- | -- |
| 67.87 | 0.384 | 7.94 | -0.45 | -- | -1.41 | -- | -0.386 | -0.369 | -- | 27.38 | 6 | -- | -- |
| 63.73 | 0.374 | 7.88 | -0.138 | 0.831 | -- | -1.04 | -- | -0.0643 | 14.7 | -- | -- | -- | -- |
| 67.54 | 0.385 | 7.88 | -0.164 | 0.827 | -- | -- | -- | -0.0704 | 14.7 | -- | -- | -- | -- |
| 68.08 | 0.384 | 7.95 | -0.519 | -- | -1.41 | -- | -- | -0.389 | -- | 27.45 | 6 | -- | -- |
| 56.71 | 0.351 | 7.91 | -- | 0.653 | -0.835 | -- | -- | -0.202 | 15 | 25.6 | 3 | -- | -- |
| 107.49 | 0.484 | 7.89 | -0.199 | -- | -- | -- | -- | -0.0914 | -- | -- | -- | -- | -- |
| 68.25 | 0.386 | 7.88 | -- | 0.831 | -- | -- | -- | -0.0522 | 14.7 | -- | -- | -- | -- |
| 74.67 | 0.404 | 7.93 | -- | -- | -1.26 | -- | -- | -0.303 | -- | 27.5 | 6 | -- | -- |
| 108.54 | 0.486 | 7.88 | -- | -- | -- | -- | -- | -0.0693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 10 | 44.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 37 | 45.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 48 | 45.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 96 | 46.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 170 | 46.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 177 | 46.88 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 180 | 46.88 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 187 | 46.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 188 | 46.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 190 | 46.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 192 | 46.92 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 219 | 47.02 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 240 | 47.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 269 | 47.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 319 | 47.77 | temperature | 25 | 90 | < th | dose dependent | sin | 8 | NA |
| 345 | 47.96 | temperature | 15 | 90 | > th | dose dependent | sin | 9 | NA |
| 353 | 48.04 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 19 |
| 375 | 48.21 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 381 | 48.26 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 398 | 48.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 417 | 48.46 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 447 | 48.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 563 | 49.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 640 | 49.63 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 14 |
| 665 | 49.76 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 15 |
| 743 | 50.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 764 | 50.09 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 785 | 50.19 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 808 | 50.30 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 855 | 50.53 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 913 | 50.68 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 13 |