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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0227900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0541) R2 : 0.269
β1 : -0.887 (0.2) R2dD : 0.0392 R2D : -0.0329
β2 : 0.532 (0.132) R2dC : 0.0268 R2C : 0.0404
β3 : 2.14 (0.262) R2dE : 0.212 R2E : 0.149
β4 : 3.36 (0.587) R2dD*C : 0.0507 R2D*C : 0.0597
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0451 (0.139) R2dN8 : 0.000277 R2N8 : -0.00869
σ : 0.946
deviance : 412.32
__
_____
C
peak time of C : 4.73
E
wheather : humidity
threshold : 90.26
memory length : 4436
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.07
open length of G : 5.65

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.02 0.954 4.41 -0.868 0.535 2.16 3.33 -0.643 0.0502 4.76 90.05 4435 4.08 5.57
412.32 0.946 4.4 -0.887 0.532 2.14 3.36 -- 0.0451 4.73 90.26 4436 4.07 5.65
440.58 0.978 4.42 -0.91 0.543 2.17 -- -0.295 0.0376 4.92 90.01 4438 4.02 5.68
440.49 0.978 4.39 -0.91 0.561 2.17 -- -- 0.0403 5.16 90.37 4436 4.03 5.68
451.1 0.995 4.53 -0.301 -- 1.14 -- 3 -0.551 -- 90.01 4438 4.02 5.68
472.39 1.02 4.56 -0.298 0.68 -- 3.42 -- -0.674 4.8 -- -- -- --
502.17 1.05 4.56 -0.31 0.715 -- -- -- -0.691 5.32 -- -- -- --
454.31 0.993 4.39 -0.966 -- 2.33 -- -- 0.114 -- 90.71 4474 3.52 5.98
460.44 0.999 4.42 -- 0.602 1.97 -- -- 0.0439 4.73 90.14 4440 4 7.01
528.81 1.07 4.57 -0.286 -- -- -- -- -0.673 -- -- -- -- --
504.71 1.05 4.56 -- 0.709 -- -- -- -0.656 5.34 -- -- -- --
467.23 1.01 4.53 -- -- 1.32 -- -- -0.475 -- 90.14 4440 4 7.01
530.97 1.08 4.57 -- -- -- -- -- -0.641 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 420.04 humidity 90.0 4320 > th dose dependent rect. 8 1
2 420.80 humidity 90.0 4320 > th dose independent rect. 5 5
5 421.51 humidity 90.0 4320 < th dose independent rect. 6 3
9 422.50 humidity 90.0 90 > th dose dependent rect. 3 17
14 424.01 humidity 90.0 4320 > th dose independent rect. 8 1
18 424.49 humidity 90.0 4320 > th dose independent rect. 6 1
22 425.10 humidity 90.0 30 > th dose independent rect. 4 10
27 425.57 humidity 50.0 1440 < th dose independent rect. 16 1
29 425.60 humidity 90.0 90 > th dose dependent sin 1 NA
30 425.67 humidity 50.0 1440 < th dose dependent rect. 16 1
35 426.02 humidity 90.0 4320 > th dose dependent rect. 4 6
36 426.05 wind 1.0 90 < th dose dependent rect. 4 1
37 426.18 humidity 90.0 30 > th dose independent rect. 4 8
39 426.22 wind 1.0 90 < th dose independent rect. 4 1
42 426.37 humidity 90.0 90 > th dose dependent rect. 3 11
44 426.42 humidity 90.0 30 > th dose independent rect. 4 6
50 426.69 humidity 90.0 90 > th dose dependent rect. 3 9
69 427.54 atmosphere 1005.0 90 < th dose independent rect. 19 9
71 427.62 temperature 30.0 720 > th dose dependent rect. 18 1
94 427.90 humidity 90.0 4320 < th dose independent rect. 8 1
104 428.29 atmosphere 1005.0 90 < th dose independent rect. 19 15
119 428.68 atmosphere 1005.0 10 > th dose independent rect. 18 12
130 428.87 atmosphere 1005.0 270 > th dose independent rect. 22 8
134 428.93 humidity 90.0 4320 > th dose independent rect. 2 12
140 428.99 humidity 50.0 1440 > th dose independent rect. 16 1
149 429.14 humidity 90.0 90 > th dose dependent rect. 4 1
168 429.42 atmosphere 1005.0 270 > th dose independent rect. 12 18
177 429.63 humidity 90.0 4320 > th dose dependent rect. 3 11
183 429.71 temperature 25.0 90 < th dose independent rect. 4 1
188 429.77 atmosphere 1005.0 720 < th dose independent rect. 19 5
195 429.85 humidity 70.0 720 < th dose dependent rect. 18 14
200 429.96 humidity 90.0 30 > th dose independent rect. 4 16
208 430.05 humidity 60.0 1440 < th dose independent rect. 17 16
214 430.15 wind 1.0 30 > th dose independent rect. 21 18
247 430.51 atmosphere 1005.0 30 < th dose independent sin 10 NA
249 430.53 humidity 70.0 720 < th dose dependent rect. 18 1
278 430.77 humidity 60.0 1440 > th dose independent rect. 17 16
281 430.81 humidity 60.0 14400 > th dose independent rect. 3 4
289 430.98 atmosphere 1005.0 10 > th dose independent rect. 12 18
294 431.08 humidity 60.0 1440 > th dose independent rect. 17 10
295 431.08 humidity 60.0 1440 > th dose independent rect. 17 12
298 431.09 humidity 60.0 1440 < th dose independent rect. 17 3
313 431.14 atmosphere 1005.0 10 > th dose independent rect. 15 15
324 431.22 humidity 60.0 1440 > th dose independent rect. 17 8
331 431.30 humidity 60.0 1440 > th dose independent rect. 17 6
332 431.32 humidity 60.0 1440 > th dose independent rect. 17 3
340 431.38 atmosphere 1005.0 270 < th dose independent sin 12 NA
354 431.52 humidity 90.0 90 > th dose independent sin 2 NA
358 431.62 humidity 50.0 1440 > th dose independent sin 11 NA
359 431.65 temperature 20.0 90 > th dose independent rect. 4 1
366 431.69 humidity 60.0 1440 < th dose dependent rect. 17 16
368 431.71 humidity 60.0 1440 < th dose dependent rect. 16 18
404 432.17 humidity 50.0 1440 < th dose independent rect. 15 21
408 432.21 humidity 90.0 90 > th dose independent rect. 4 1
446 432.32 temperature 15.0 90 > th dose dependent rect. 4 1
447 432.33 atmosphere 1005.0 90 > th dose independent sin 8 NA
455 432.38 humidity 50.0 1440 < th dose independent sin 10 NA
462 432.41 humidity 50.0 1440 > th dose independent rect. 15 21
485 432.71 atmosphere 1005.0 720 > th dose independent rect. 18 9
498 432.81 temperature 15.0 270 > th dose dependent rect. 1 5
537 433.10 wind 1.0 90 < th dose independent rect. 1 4
589 433.43 atmosphere 1005.0 10 < th dose independent rect. 19 21
595 433.44 humidity 50.0 1440 < th dose independent rect. 14 3
602 433.51 humidity 90.0 4320 > th dose independent sin 4 NA
614 433.62 wind 1.0 30 > th dose independent rect. 21 15
616 433.64 wind 3.0 14400 < th dose dependent rect. 1 2
626 433.72 atmosphere 1005.0 4320 > th dose independent rect. 23 1
628 433.74 humidity 50.0 1440 > th dose independent rect. 15 14
629 433.75 humidity 50.0 1440 < th dose independent rect. 9 8
647 433.76 humidity 50.0 1440 > th dose independent rect. 15 12
651 433.81 humidity 60.0 1440 < th dose dependent sin 11 NA
656 433.83 humidity 50.0 1440 > th dose independent rect. 15 17
665 433.88 humidity 50.0 1440 > th dose independent rect. 15 10
666 433.90 humidity 50.0 1440 > th dose independent rect. 14 3
690 433.92 humidity 50.0 1440 > th dose independent rect. 15 6
692 433.92 humidity 50.0 1440 > th dose independent rect. 15 8
694 433.93 temperature 30.0 720 > th dose independent rect. 18 1
730 434.03 wind 1.0 10 > th dose independent rect. 6 23
760 434.17 atmosphere 1015.0 30 < th dose dependent rect. 6 22
780 434.29 wind 1.0 30 > th dose independent sin 4 NA
812 434.37 wind 1.0 90 < th dose dependent rect. 4 10
820 434.42 atmosphere 995.0 10 > th dose dependent rect. 16 14
840 434.50 wind 3.0 30 < th dose dependent rect. 2 4
871 434.72 temperature 25.0 30 < th dose independent rect. 4 4
875 434.73 temperature 20.0 270 > th dose independent rect. 1 6
877 434.74 atmosphere 1005.0 10 > th dose independent rect. 2 4
879 434.75 atmosphere 1005.0 270 > th dose independent rect. 1 4
998 435.14 precipitation 0.1 4320 < th dose independent rect. 7 1
1000 435.14 precipitation 0.1 4320 < th dose dependent rect. 7 1