Os03g0227700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os03g0227700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.92 | 0.581 | 10.2 | -0.586 | 1.73 | -2.91 | -0.711 | -1.87 | -0.357 | 17 | 1.04 | 4324 | -- | -- |
| 153.71 | 0.577 | 10.3 | -0.934 | 1.6 | -2.88 | -0.535 | -- | -0.468 | 18.1 | 1.091 | 4449 | -- | -- |
| 153.74 | 0.577 | 10.2 | -0.626 | 1.66 | -3.04 | -- | -1.81 | -0.351 | 17.5 | 0.9796 | 4376 | -- | -- |
| 151.35 | 0.573 | 10.3 | -0.956 | 1.32 | -3.21 | -- | -- | -0.426 | 19.1 | 1.316 | 4548 | -- | -- |
| 159.83 | 0.589 | 10.3 | -0.892 | -- | -3.98 | -- | -0.41 | -0.427 | -- | 1.38 | 4958 | -- | -- |
| 291.89 | 0.801 | 10.2 | -0.0699 | 1.69 | -- | -0.857 | -- | 0.107 | 17.1 | -- | -- | -- | -- |
| 293.7 | 0.803 | 10.2 | -0.0717 | 1.69 | -- | -- | -- | 0.103 | 17.1 | -- | -- | -- | -- |
| 159.83 | 0.589 | 10.3 | -0.946 | -- | -3.94 | -- | -- | -0.435 | -- | 1.379 | 4959 | -- | -- |
| 170.58 | 0.608 | 10.3 | -- | 1.36 | -2.82 | -- | -- | -0.302 | 18.8 | 1.74 | 4543 | -- | -- |
| 443.11 | 0.984 | 10.2 | -0.132 | -- | -- | -- | -- | 0.0602 | -- | -- | -- | -- | -- |
| 293.84 | 0.802 | 10.2 | -- | 1.69 | -- | -- | -- | 0.111 | 17.1 | -- | -- | -- | -- |
| 179.07 | 0.623 | 10.2 | -- | -- | -3.63 | -- | -- | -0.333 | -- | 1.942 | 4954 | -- | -- |
| 443.57 | 0.983 | 10.2 | -- | -- | -- | -- | -- | 0.0748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 5 | 145.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 8 | 145.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 11 | 145.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 21 | 145.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 23 | 146.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 34 | 146.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 35 | 146.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 37 | 146.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 91 | 147.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 92 | 147.16 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 93 | 147.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 96 | 147.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 105 | 147.61 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 111 | 147.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 121 | 147.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 20 |
| 122 | 147.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 18 |
| 127 | 147.91 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 14 |
| 136 | 147.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 156 | 148.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 179 | 148.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 189 | 148.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 197 | 148.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 216 | 148.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 253 | 148.56 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 283 | 148.63 | radiation | 1 | 4320 | < th | dose dependent | sin | 12 | NA |
| 297 | 148.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 301 | 148.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 309 | 148.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 13 |
| 310 | 148.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 311 | 148.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 353 | 148.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 355 | 148.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 382 | 149.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 395 | 149.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 436 | 149.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 437 | 149.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 503 | 149.32 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 530 | 149.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 531 | 149.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 549 | 149.44 | radiation | 1 | 43200 | < th | dose independent | sin | 13 | NA |
| 553 | 149.50 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 558 | 149.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 568 | 149.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 574 | 149.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 633 | 149.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 649 | 149.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 739 | 150.05 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 755 | 150.07 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 777 | 150.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 816 | 150.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 820 | 150.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 826 | 150.23 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 831 | 150.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 867 | 150.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 898 | 150.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 900 | 150.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 904 | 150.38 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 907 | 150.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 930 | 150.44 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 933 | 150.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 976 | 150.59 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 988 | 150.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 989 | 150.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 14 |