Os03g0225700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0225700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.59 | 0.565 | 9.93 | 1.35 | 1.23 | -1.08 | -0.71 | 0.867 | 0.00929 | 2.02 | 57 | 1338 | -- | -- |
| 145.64 | 0.562 | 9.94 | 1.33 | 1.24 | -1.01 | -0.669 | -- | 0.0191 | 2.05 | 56 | 1338 | -- | -- |
| 146.49 | 0.564 | 9.93 | 1.37 | 1.23 | -1.09 | -- | 0.759 | 0.0118 | 2.04 | 57 | 1338 | -- | -- |
| 147.26 | 0.565 | 9.94 | 1.34 | 1.23 | -1.02 | -- | -- | 0.0222 | 2.04 | 56.46 | 1338 | -- | -- |
| 181.03 | 0.627 | 9.89 | 1.21 | -- | -0.858 | -- | 0.753 | 0.239 | -- | 74 | 118 | -- | -- |
| 177.9 | 0.625 | 9.9 | 1.11 | 1.12 | -- | -0.859 | -- | 0.222 | 2.02 | -- | -- | -- | -- |
| 180.71 | 0.63 | 9.9 | 1.13 | 1.12 | -- | -- | -- | 0.227 | 2.05 | -- | -- | -- | -- |
| 182.44 | 0.632 | 9.88 | 1.24 | -- | -0.837 | -- | -- | 0.292 | -- | 73.25 | 80 | -- | -- |
| 192.98 | 0.647 | 9.96 | -- | 1.25 | -0.796 | -- | -- | -0.0381 | 2.09 | 57 | 1338 | -- | -- |
| 255.7 | 0.747 | 9.89 | 1.18 | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
| 214.52 | 0.685 | 9.93 | -- | 1.14 | -- | -- | -- | 0.101 | 2.08 | -- | -- | -- | -- |
| 221.88 | 0.694 | 9.91 | -- | -- | -0.875 | -- | -- | 0.134 | -- | 74 | 120 | -- | -- |
| 292.37 | 0.798 | 9.92 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.51 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 2 | 143.23 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 4 | 143.32 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 6 | 143.50 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 14 |
| 9 | 143.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 10 | 143.61 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 11 | 143.62 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 10 |
| 13 | 143.66 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 18 | 143.76 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 19 | 143.76 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 33 | 144.08 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 37 | 144.11 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 38 | 144.12 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 46 | 144.16 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 48 | 144.17 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 61 | 144.38 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 67 | 144.45 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 95 | 144.53 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 101 | 144.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 144 | 144.85 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 172 | 145.13 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 187 | 145.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 268 | 145.88 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 272 | 145.93 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 276 | 145.93 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 309 | 146.03 | humidity | 60 | 1440 | > th | dose independent | sin | 13 | NA |
| 315 | 146.11 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 328 | 146.27 | humidity | 60 | 1440 | < th | dose dependent | sin | 15 | NA |
| 330 | 146.29 | humidity | 60 | 1440 | < th | dose independent | sin | 13 | NA |
| 335 | 146.36 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 356 | 146.50 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 399 | 146.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 403 | 146.78 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 14 |
| 404 | 146.79 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 470 | 147.09 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 515 | 147.27 | humidity | 80 | 1440 | < th | dose dependent | sin | 1 | NA |
| 569 | 147.47 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 645 | 147.78 | humidity | 60 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 717 | 147.87 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 728 | 147.90 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 766 | 148.00 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 784 | 148.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 793 | 148.12 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |