Os03g0225300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0225300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.26 | 0.206 | 10.3 | 0.776 | 0.352 | 0.43 | -0.314 | 0.0418 | 0.0283 | 0.324 | 71.69 | 1631 | -- | -- |
| 19.22 | 0.204 | 10.3 | 0.792 | 0.354 | 0.418 | -0.31 | -- | 0.032 | 0.26 | 69 | 1646 | -- | -- |
| 19.65 | 0.206 | 10.3 | 0.785 | 0.355 | 0.407 | -- | -0.0674 | 0.0271 | 0.472 | 69.85 | 1613 | -- | -- |
| 19.63 | 0.206 | 10.3 | 0.803 | 0.351 | 0.418 | -- | -- | 0.0316 | 0.397 | 68.76 | 1625 | -- | -- |
| 26.17 | 0.24 | 10.3 | 0.812 | -- | 0.298 | -- | 0.0568 | 0.0122 | -- | 69.22 | 1655 | -- | -- |
| 21.89 | 0.219 | 10.3 | 0.799 | 0.388 | -- | -0.325 | -- | -0.019 | 0.732 | -- | -- | -- | -- |
| 22.34 | 0.221 | 10.3 | 0.811 | 0.389 | -- | -- | -- | -0.0175 | 0.79 | -- | -- | -- | -- |
| 26.18 | 0.239 | 10.3 | 0.814 | -- | 0.301 | -- | -- | 0.0123 | -- | 68.69 | 1655 | -- | -- |
| 34.7 | 0.274 | 10.3 | -- | 0.505 | 0.645 | -- | -- | 0.0231 | 0.583 | 81.01 | 2446 | -- | -- |
| 31.78 | 0.263 | 10.3 | 0.825 | -- | -- | -- | -- | -0.0104 | -- | -- | -- | -- | -- |
| 39.67 | 0.295 | 10.3 | -- | 0.402 | -- | -- | -- | -0.108 | 0.882 | -- | -- | -- | -- |
| 42.98 | 0.305 | 10.3 | -- | -- | 0.674 | -- | -- | -0.000554 | -- | 81.69 | 1677 | -- | -- |
| 49.74 | 0.329 | 10.3 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.88 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 2 | 18.93 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 3 | 19.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 5 | 19.15 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 6 | 19.18 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 10 | 19.24 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 11 | 19.24 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 17 | 19.30 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 19 | 19.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 21 | 19.31 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 24 | 19.32 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 25 | 19.32 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 27 | 19.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 21 | 20 |
| 28 | 19.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 21 | 20 |
| 35 | 19.33 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 20 |
| 36 | 19.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 21 | 20 |
| 38 | 19.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 39 | 19.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 41 | 19.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 47 | 19.35 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 81 | 19.39 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 85 | 19.39 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 87 | 19.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 88 | 19.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 106 | 19.40 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 127 | 19.41 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 130 | 19.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 137 | 19.41 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 22 |
| 139 | 19.41 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 144 | 19.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 159 | 19.43 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 166 | 19.43 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 173 | 19.44 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 201 | 19.45 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 207 | 19.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 19 |
| 219 | 19.46 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 220 | 19.46 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 226 | 19.46 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 232 | 19.46 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 257 | 19.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 271 | 19.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 292 | 19.48 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 310 | 19.49 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 329 | 19.49 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 354 | 19.50 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 360 | 19.50 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 17 |
| 379 | 19.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 386 | 19.51 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 391 | 19.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 404 | 19.52 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 429 | 19.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 458 | 19.54 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 475 | 19.54 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 516 | 19.55 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 529 | 19.56 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 532 | 19.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 579 | 19.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 580 | 19.57 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 19 |
| 601 | 19.57 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 19 |
| 613 | 19.58 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 633 | 19.58 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 18 | 16 |
| 643 | 19.59 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 663 | 19.60 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 721 | 19.61 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 735 | 19.61 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 762 | 19.62 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 764 | 19.62 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 12 |
| 773 | 19.62 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 781 | 19.62 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 7 | NA |
| 800 | 19.62 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 16 |
| 814 | 19.63 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 818 | 19.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 842 | 19.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 12 |
| 872 | 19.64 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 906 | 19.65 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 954 | 19.66 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |