Os03g0225200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os03g0225200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.9 | 0.56 | 5.14 | -0.239 | 1.09 | 1.24 | -1.58 | 0.872 | 0.202 | 3.35 | 51.12 | 1033 | -- | -- |
| 142.64 | 0.556 | 5.14 | -0.155 | 1.09 | 1.35 | -1.68 | -- | 0.217 | 3.15 | 49 | 1002 | -- | -- |
| 149.12 | 0.569 | 5.14 | -0.249 | 1.09 | 1.2 | -- | 1.45 | 0.212 | 3.35 | 52 | 1053 | -- | -- |
| 152.23 | 0.575 | 5.13 | -0.126 | 1.1 | 1.3 | -- | -- | 0.226 | 3.38 | 48.84 | 1056 | -- | -- |
| 186.04 | 0.635 | 5.13 | -0.0869 | -- | 1.43 | -- | -0.422 | 0.277 | -- | 11.62 | 1847 | -- | -- |
| 171.65 | 0.614 | 5.14 | -0.212 | 0.968 | -- | -1.68 | -- | 0.179 | 4.36 | -- | -- | -- | -- |
| 178.92 | 0.626 | 5.13 | -0.196 | 0.968 | -- | -- | -- | 0.188 | 4.7 | -- | -- | -- | -- |
| 186.27 | 0.636 | 5.13 | -0.129 | -- | 1.4 | -- | -- | 0.27 | -- | 31.92 | 1852 | -- | -- |
| 152.65 | 0.575 | 5.13 | -- | 1.1 | 1.32 | -- | -- | 0.24 | 3.38 | 48 | 1056 | -- | -- |
| 228.6 | 0.706 | 5.14 | -0.159 | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
| 179.93 | 0.627 | 5.13 | -- | 0.964 | -- | -- | -- | 0.21 | 4.71 | -- | -- | -- | -- |
| 186.62 | 0.636 | 5.13 | -- | -- | 1.4 | -- | -- | 0.286 | -- | 48.54 | 1850 | -- | -- |
| 229.27 | 0.707 | 5.14 | -- | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.72 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 4 | 129.09 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 14 | 129.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 21 | 129.66 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 25 | 129.93 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 26 | 129.95 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 31 | 130.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 36 | 130.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 55 | 131.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 95 | 132.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 107 | 132.60 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 122 | 133.04 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 141 | 133.21 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 163 | 134.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 225 | 136.05 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 231 | 136.21 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 237 | 136.66 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 239 | 136.76 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 8 |
| 244 | 137.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 279 | 137.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 292 | 138.30 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 297 | 138.38 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 4 |
| 326 | 138.88 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 332 | 138.99 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 16 |
| 336 | 139.03 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 1 |
| 338 | 139.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 376 | 139.56 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 385 | 139.74 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 6 |
| 389 | 139.80 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 439 | 140.45 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 440 | 140.51 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 456 | 140.70 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 475 | 140.89 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 506 | 141.14 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 19 |
| 530 | 141.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 537 | 141.50 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 19 |
| 540 | 141.52 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 571 | 141.68 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 643 | 142.31 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 9 |
| 653 | 142.35 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 662 | 142.47 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 706 | 142.64 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 767 | 142.93 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 769 | 142.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 775 | 143.01 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 800 | 143.06 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 806 | 143.08 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 810 | 143.11 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 889 | 143.51 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 19 |