Os03g0224700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HSP protein (Fragment).
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Os03g0224700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HSP protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.68 | 0.281 | 10.8 | 0.307 | 0.492 | -0.685 | -0.376 | 1.08 | -0.0929 | 9.35 | 20.41 | 1457 | -- | -- |
| 35.37 | 0.277 | 10.8 | 0.224 | 0.494 | -0.926 | -0.387 | -- | -0.0871 | 9.47 | 10.59 | 7484 | -- | -- |
| 36.09 | 0.28 | 10.8 | 0.278 | 0.486 | -0.679 | -- | 1.08 | -0.104 | 9.76 | 20.8 | 1566 | -- | -- |
| 35.9 | 0.279 | 10.8 | 0.199 | 0.491 | -0.911 | -- | -- | -0.0863 | 9.7 | 10.98 | 7524 | -- | -- |
| 41.35 | 0.3 | 10.8 | 0.143 | -- | -0.876 | -- | 0.966 | -0.142 | -- | 17.52 | 819 | -- | -- |
| 49.16 | 0.329 | 10.8 | -0.255 | 0.505 | -- | -0.34 | -- | -0.333 | 9.64 | -- | -- | -- | -- |
| 49.57 | 0.33 | 10.8 | -0.266 | 0.506 | -- | -- | -- | -0.333 | 9.8 | -- | -- | -- | -- |
| 41.59 | 0.3 | 10.8 | 0.00127 | -- | -1.09 | -- | -- | -0.142 | -- | 15.6 | 827 | -- | -- |
| 36.62 | 0.282 | 10.8 | -- | 0.495 | -0.797 | -- | -- | -0.132 | 9.65 | 10.59 | 7475 | -- | -- |
| 64.82 | 0.376 | 10.9 | -0.272 | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
| 51.44 | 0.335 | 10.8 | -- | 0.506 | -- | -- | -- | -0.303 | 9.84 | -- | -- | -- | -- |
| 41.5 | 0.3 | 10.8 | -- | -- | -1.15 | -- | -- | -0.15 | -- | 15.5 | 812 | -- | -- |
| 66.76 | 0.381 | 10.8 | -- | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 5 | 34.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 11 | 34.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 13 | 34.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 30 | 35.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 38 | 35.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 39 | 35.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 59 | 35.25 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 71 | 35.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 74 | 35.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 76 | 35.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 89 | 35.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 97 | 35.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 117 | 35.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 156 | 35.53 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 191 | 35.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 202 | 35.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 347 | 35.74 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 380 | 35.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 426 | 35.82 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 547 | 35.99 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 556 | 36.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 624 | 36.09 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 633 | 36.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 705 | 36.18 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 767 | 36.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 790 | 36.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 798 | 36.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 850 | 36.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |