Os03g0223000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Atypical receptor-like kinase MARK.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0223000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Atypical receptor-like kinase MARK.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 443.51 | 0.989 | 8.25 | -2.32 | 0.79 | -1.35 | 1.92 | -0.608 | -0.867 | 5.85 | 68.12 | 1224 | -- | -- |
| 444.19 | 0.982 | 8.26 | -2.39 | 0.785 | -1.38 | 1.94 | -- | -0.884 | 5.74 | 68.02 | 1236 | -- | -- |
| 452.4 | 0.991 | 8.25 | -2.3 | 0.798 | -1.36 | -- | -0.664 | -0.879 | 6.05 | 68.1 | 1223 | -- | -- |
| 453.31 | 0.992 | 8.26 | -2.38 | 0.792 | -1.4 | -- | -- | -0.889 | 6.06 | 68.01 | 1223 | -- | -- |
| 484.82 | 1.03 | 8.25 | -2.29 | -- | -1.43 | -- | -0.649 | -0.842 | -- | 68 | 1244 | -- | -- |
| 514.15 | 1.06 | 8.26 | -2.07 | 0.92 | -- | 2.07 | -- | -0.878 | 4.68 | -- | -- | -- | -- |
| 525.47 | 1.07 | 8.27 | -2.09 | 0.933 | -- | -- | -- | -0.888 | 4.69 | -- | -- | -- | -- |
| 485.54 | 1.03 | 8.28 | -2.37 | -- | -1.47 | -- | -- | -0.877 | -- | 68.33 | 1244 | -- | -- |
| 598.39 | 1.14 | 8.16 | -- | 0.845 | -1.06 | -- | -- | -0.674 | 5.95 | 67.26 | 1232 | -- | -- |
| 571.69 | 1.12 | 8.27 | -2.05 | -- | -- | -- | -- | -0.864 | -- | -- | -- | -- | -- |
| 640.12 | 1.18 | 8.21 | -- | 0.895 | -- | -- | -- | -0.656 | 4.76 | -- | -- | -- | -- |
| 628.26 | 1.17 | 8.19 | -- | -- | -1.14 | -- | -- | -0.548 | -- | 67.73 | 1252 | -- | -- |
| 682.57 | 1.22 | 8.22 | -- | -- | -- | -- | -- | -0.636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 434.76 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 2 | 434.80 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 435.37 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 17 | 439.05 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 33 | 442.97 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 34 | 443.50 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 35 | 443.79 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 36 | 444.08 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 38 | 444.46 | humidity | 70 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 39 | 444.49 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 53 | 444.78 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 113 | 446.24 | humidity | 60 | 1440 | > th | dose independent | sin | 12 | NA |
| 120 | 446.54 | humidity | 60 | 1440 | < th | dose independent | sin | 12 | NA |
| 138 | 447.10 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 162 | 447.75 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 163 | 447.84 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 165 | 447.96 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 170 | 448.04 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 186 | 448.10 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 259 | 449.13 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 648 | 453.51 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 758 | 454.59 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 837 | 454.86 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 890 | 455.14 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 953 | 455.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |