Os03g0220300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0220300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.19 | 0.458 | 8.59 | 1.25 | 0.753 | -1.1 | -0.684 | -0.842 | 0.232 | 1.49 | 21.93 | 973 | -- | -- |
| 96.87 | 0.458 | 8.56 | 1.49 | 0.748 | -1.08 | -0.86 | -- | 0.296 | 1.42 | 22.09 | 979 | -- | -- |
| 96.91 | 0.458 | 8.59 | 1.24 | 0.755 | -1.09 | -- | -0.946 | 0.226 | 1.6 | 22.1 | 973 | -- | -- |
| 99.81 | 0.465 | 8.56 | 1.5 | 0.753 | -1.05 | -- | -- | 0.298 | 1.66 | 22.17 | 981 | -- | -- |
| 126.42 | 0.524 | 8.61 | 1.26 | -- | -1.06 | -- | -0.921 | 0.172 | -- | 22.1 | 1752 | -- | -- |
| 142.21 | 0.559 | 8.64 | 1.12 | 0.607 | -- | -0.775 | -- | -0.0521 | 1.94 | -- | -- | -- | -- |
| 144.36 | 0.563 | 8.63 | 1.14 | 0.613 | -- | -- | -- | -0.0484 | 2.29 | -- | -- | -- | -- |
| 127.07 | 0.525 | 8.55 | 1.59 | -- | -1.06 | -- | -- | 0.314 | -- | 22.06 | 1735 | -- | -- |
| 153.47 | 0.577 | 8.61 | -- | 0.749 | -0.733 | -- | -- | 0.0533 | 1.73 | 22.3 | 889 | -- | -- |
| 166.68 | 0.603 | 8.63 | 1.17 | -- | -- | -- | -- | -0.0335 | -- | -- | -- | -- | -- |
| 178.75 | 0.625 | 8.66 | -- | 0.635 | -- | -- | -- | -0.176 | 2.32 | -- | -- | -- | -- |
| 181.02 | 0.627 | 8.62 | -- | -- | -0.612 | -- | -- | 0.022 | -- | 22.3 | 423 | -- | -- |
| 202.67 | 0.664 | 8.66 | -- | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 5 | 93.29 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 8 | 93.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 18 | 94.43 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 23 | 94.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 33 | 95.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 57 | 95.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 222 | 97.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 241 | 97.67 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 261 | 97.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 284 | 98.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 353 | 98.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 513 | 100.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 602 | 100.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 620 | 101.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 622 | 101.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 633 | 101.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 650 | 101.26 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 655 | 101.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 657 | 101.30 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 680 | 101.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 694 | 101.55 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 705 | 101.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 718 | 101.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 729 | 101.73 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 750 | 101.79 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 779 | 101.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 823 | 102.06 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 840 | 102.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 893 | 102.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 915 | 102.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 918 | 102.46 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 935 | 102.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 961 | 102.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 980 | 102.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 983 | 102.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 998 | 102.75 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |