Os03g0218500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 70kD heat shock protein.
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Os03g0218500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 70kD heat shock protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.86 | 0.612 | 8.34 | -2.19 | 2.87 | 1.62 | 2.09 | -1.09 | -0.651 | 9.86 | 24.36 | 1429 | -- | -- |
| 170.66 | 0.608 | 8.32 | -1.9 | 2.84 | 1.54 | 2.09 | -- | -0.629 | 9.87 | 24.23 | 1438 | -- | -- |
| 186.36 | 0.636 | 8.34 | -2.14 | 2.85 | 1.62 | -- | -1.17 | -0.667 | 9.76 | 24.2 | 1458 | -- | -- |
| 187.11 | 0.637 | 8.3 | -1.81 | 2.85 | 1.51 | -- | -- | -0.588 | 9.74 | 24.09 | 1480 | -- | -- |
| 610.96 | 1.16 | 8.38 | -1.55 | -- | 2.24 | -- | 0.913 | -0.607 | -- | 22.73 | 1507 | -- | -- |
| 261.4 | 0.758 | 8.25 | -1.34 | 2.81 | -- | 2 | -- | -0.33 | 9.67 | -- | -- | -- | -- |
| 276.4 | 0.779 | 8.25 | -1.26 | 2.81 | -- | -- | -- | -0.328 | 9.62 | -- | -- | -- | -- |
| 607.05 | 1.15 | 8.4 | -1.71 | -- | 2.34 | -- | -- | -0.667 | -- | 22.4 | 1510 | -- | -- |
| 265.39 | 0.759 | 8.25 | -- | 2.87 | 1.15 | -- | -- | -0.309 | 9.74 | 24.94 | 1507 | -- | -- |
| 743.63 | 1.27 | 8.32 | -1.29 | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
| 318.46 | 0.835 | 8.22 | -- | 2.81 | -- | -- | -- | -0.187 | 9.65 | -- | -- | -- | -- |
| 681.71 | 1.22 | 8.35 | -- | -- | 2.02 | -- | -- | -0.437 | -- | 22.4 | 1510 | -- | -- |
| 787.25 | 1.31 | 8.29 | -- | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 168.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 10 | 169.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 18 | 169.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 16 |
| 23 | 169.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 68 | 169.74 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 69 | 169.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 76 | 169.80 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 105 | 169.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 136 | 170.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 18 |
| 191 | 170.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 198 | 170.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 214 | 170.36 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 242 | 170.44 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 285 | 170.59 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 294 | 170.62 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 298 | 170.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 312 | 170.69 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 462 | 171.60 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 480 | 171.74 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 494 | 171.82 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 496 | 171.84 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 511 | 171.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 522 | 171.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 566 | 172.19 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 581 | 172.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 584 | 172.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 596 | 172.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 652 | 172.42 | temperature | 30 | 14400 | < th | dose independent | sin | 4 | NA |
| 662 | 172.47 | temperature | 30 | 14400 | > th | dose independent | sin | 4 | NA |
| 718 | 172.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 727 | 172.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 728 | 172.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 14 |
| 729 | 172.78 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 777 | 172.80 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 821 | 172.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 840 | 172.83 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 967 | 172.96 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 986 | 173.04 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |