Os03g0218300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0218300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.74 | 0.318 | 10.2 | 1.94 | 0.155 | -0.893 | 0.165 | 3.41 | 0.535 | 6.03 | 13.53 | 1710 | -- | -- |
| 51.81 | 0.335 | 10.3 | 1.55 | 0.209 | -0.987 | 0.175 | -- | 0.506 | 5.92 | 7.25 | 11331 | -- | -- |
| 45.78 | 0.315 | 10.2 | 1.94 | 0.159 | -0.894 | -- | 3.4 | 0.533 | 5.56 | 13.58 | 1696 | -- | -- |
| 51.72 | 0.335 | 10.3 | 1.53 | 0.213 | -0.993 | -- | -- | 0.498 | 5.11 | 8.711 | 11242 | -- | -- |
| 46.95 | 0.319 | 10.2 | 1.96 | -- | -0.908 | -- | 3.41 | 0.543 | -- | 13.59 | 1802 | -- | -- |
| 67.66 | 0.386 | 10.4 | 0.906 | 0.183 | -- | 0.166 | -- | 0.175 | 6.11 | -- | -- | -- | -- |
| 67.7 | 0.385 | 10.4 | 0.907 | 0.185 | -- | -- | -- | 0.175 | 5.7 | -- | -- | -- | -- |
| 53.87 | 0.342 | 10.3 | 1.51 | -- | -0.977 | -- | -- | 0.489 | -- | 9.103 | 10726 | -- | -- |
| 86.1 | 0.432 | 10.4 | -- | 0.0613 | -0.518 | -- | -- | 0.137 | 4.3 | 4.36 | 414 | -- | -- |
| 69.48 | 0.389 | 10.4 | 0.913 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 89.4 | 0.442 | 10.4 | -- | 0.2 | -- | -- | -- | 0.0735 | 5.49 | -- | -- | -- | -- |
| 86.23 | 0.433 | 10.4 | -- | -- | -0.569 | -- | -- | 0.143 | -- | 4.417 | 381 | -- | -- |
| 91.48 | 0.446 | 10.4 | -- | -- | -- | -- | -- | 0.0777 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 5 | 41.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 11 | 41.71 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 13 | 41.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 19 | 41.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 24 | 41.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 100 | 42.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 117 | 42.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 132 | 42.41 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 136 | 42.42 | radiation | 20 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 147 | 42.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 151 | 42.46 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 154 | 42.46 | radiation | 20 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 156 | 42.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 170 | 42.51 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 176 | 42.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 187 | 42.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 196 | 42.58 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 201 | 42.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 8 |
| 212 | 42.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 223 | 42.63 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 274 | 42.78 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 287 | 42.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 315 | 42.87 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 317 | 42.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 351 | 42.94 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 400 | 43.01 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 413 | 43.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 417 | 43.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 443 | 43.10 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 466 | 43.16 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 505 | 43.21 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 507 | 43.22 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 508 | 43.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 513 | 43.24 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 529 | 43.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 558 | 43.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 563 | 43.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 569 | 43.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 576 | 43.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 612 | 43.41 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 636 | 43.46 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 643 | 43.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 644 | 43.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 649 | 43.48 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 666 | 43.52 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 673 | 43.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 717 | 43.56 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 721 | 43.57 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 739 | 43.59 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 741 | 43.59 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 757 | 43.60 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 777 | 43.63 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 816 | 43.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 822 | 43.67 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 826 | 43.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 844 | 43.67 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 13 |
| 879 | 43.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 904 | 43.71 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 956 | 43.74 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 985 | 43.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 989 | 43.76 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 1 |