Os03g0216600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-glucosidase (EC 3.2.1.20).
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Os03g0216600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-glucosidase (EC 3.2.1.20).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.07 | 0.249 | 12.3 | 0.91 | 0.466 | 0.307 | -0.232 | -0.931 | 0.422 | 22 | 93 | 688 | -- | -- |
| 29 | 0.251 | 12.3 | 0.828 | 0.507 | 0.334 | 0.148 | -- | 0.438 | 21.9 | 90.36 | 692 | -- | -- |
| 27.43 | 0.244 | 12.3 | 0.938 | 0.44 | 0.393 | -- | -1.39 | 0.389 | 21.7 | 94.05 | 376 | -- | -- |
| 29.04 | 0.251 | 12.3 | 0.82 | 0.516 | 0.372 | -- | -- | 0.427 | 21.8 | 90.48 | 699 | -- | -- |
| 38.33 | 0.288 | 12.3 | 0.887 | -- | 0.223 | -- | -2.02 | 0.41 | -- | 94.7 | 329 | -- | -- |
| 31 | 0.261 | 12.3 | 0.852 | 0.406 | -- | 0.095 | -- | 0.365 | 22.2 | -- | -- | -- | -- |
| 31.04 | 0.261 | 12.3 | 0.848 | 0.405 | -- | -- | -- | 0.365 | 22.2 | -- | -- | -- | -- |
| 39.47 | 0.294 | 12.3 | 0.824 | -- | 0.206 | -- | -- | 0.399 | -- | 90.48 | 699 | -- | -- |
| 46.54 | 0.318 | 12.3 | -- | 0.511 | 0.433 | -- | -- | 0.362 | 22.2 | 90.02 | 749 | -- | -- |
| 41 | 0.299 | 12.3 | 0.854 | -- | -- | -- | -- | 0.366 | -- | -- | -- | -- | -- |
| 50.01 | 0.331 | 12.4 | -- | 0.41 | -- | -- | -- | 0.271 | 22.3 | -- | -- | -- | -- |
| 56.39 | 0.35 | 12.3 | -- | -- | 0.504 | -- | -- | 0.348 | -- | 82 | 1532 | -- | -- |
| 60.24 | 0.362 | 12.4 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.68 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 26.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 27.05 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 4 | 27.16 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 27 | 27.41 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 54 | 27.57 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 63 | 27.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 72 | 27.71 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 77 | 27.74 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 87 | 27.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 92 | 27.81 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 93 | 27.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 95 | 27.82 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 123 | 27.93 | humidity | 90.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 125 | 27.94 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 206 | 28.15 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 207 | 28.15 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 221 | 28.18 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 264 | 28.25 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 274 | 28.26 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 280 | 28.27 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 291 | 28.29 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 293 | 28.29 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 296 | 28.30 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 376 | 28.39 | humidity | 90.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 381 | 28.40 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 389 | 28.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 391 | 28.41 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 504 | 28.48 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 518 | 28.50 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 522 | 28.50 | humidity | 90.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 529 | 28.50 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 559 | 28.52 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 564 | 28.53 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 572 | 28.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 586 | 28.54 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 595 | 28.54 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 602 | 28.54 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 605 | 28.54 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 618 | 28.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 677 | 28.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 6 |
| 690 | 28.58 | humidity | 90.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 762 | 28.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 782 | 28.62 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 800 | 28.63 | humidity | 50.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 809 | 28.63 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 842 | 28.66 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 897 | 28.68 | wind | 7.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 910 | 28.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 929 | 28.69 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 8 |
| 959 | 28.70 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 979 | 28.71 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 996 | 28.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 21 |