Os03g0216400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0216400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.76	(0.0256)	R²	:	0.786
β₁	:	1.42	(0.0951)	R²_dD	:	0.109	R²_D	:	0.107
β₂	:	1.91	(0.0715)	R²_dC	:	0.408	R²_C	:	0.527
β₃	:	-0.959	(0.0912)	R²_dE	:	0.0669	R²_E	:	0.229
β₄	:	3.23	(0.288)	R²_dD*C	:	0.0627	R²_D*C	:	0.0661
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.135	(0.0547)	R²_dN8	:	0.00365	R²_N8	:	-0.00785
σ	:	0.479
deviance	:	105.66
__

_____

C
peak time of C	:	19.8
E
wheather	:	temperature
threshold	:	29.6
memory length	:	309
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
105.53	0.483	3.75	1.46	1.92	-0.922	3.23	-0.597	0.14	19.8	29.5	309	--	--
105.66	0.479	3.76	1.42	1.91	-0.959	3.23	--	0.135	19.8	29.6	309	--	--
133.49	0.538	3.72	1.57	1.9	-0.891	--	-2.67	0.217	19.7	29.54	328	--	--
135.69	0.543	3.77	1.36	1.89	-1.14	--	--	0.16	19.6	29.8	332	--	--
254.14	0.742	3.74	1.63	--	-1.63	--	-3.14	0.00981	--	28.5	461	--	--
127.84	0.53	3.77	1.55	2.26	--	3.8	--	0.139	19.3	--	--	--	--
166.79	0.605	3.76	1.47	2.27	--	--	--	0.147	19.3	--	--	--	--
254.45	0.743	3.76	1.06	--	-2.11	--	--	-0.131	--	28.3	493	--	--
178.26	0.622	3.78	--	1.75	-1.39	--	--	0.0216	19.7	29.7	421	--	--
440.7	0.981	3.71	1.43	--	--	--	--	0.108	--	--	--	--	--
223.65	0.7	3.8	--	2.26	--	--	--	-0.0166	19.3	--	--	--	--
282.58	0.783	3.79	--	--	-2.27	--	--	-0.251	--	28.5	506	--	--
494.53	1.04	3.75	--	--	--	--	--	-0.0504	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	91.49	temperature	15.0	90	> th	dose dependent	rect.	13	8
3	93.57	atmosphere	1015.0	90	< th	dose dependent	rect.	13	8
21	96.75	temperature	30.0	270	< th	dose independent	rect.	8	15
22	96.97	atmosphere	1015.0	90	< th	dose independent	rect.	21	16
29	97.65	temperature	30.0	270	< th	dose independent	rect.	8	17
30	97.75	wind	7.0	90	< th	dose independent	rect.	13	8
34	98.23	radiation	40.0	270	< th	dose independent	rect.	8	15
37	98.25	radiation	40.0	270	< th	dose independent	rect.	8	5
52	99.07	radiation	40.0	270	< th	dose independent	rect.	8	17
59	99.23	temperature	10.0	90	> th	dose independent	rect.	13	8
61	99.23	atmosphere	1010.0	90	< th	dose independent	rect.	13	8
63	99.23	temperature	10.0	90	> th	dose independent	rect.	21	16
64	99.23	atmosphere	995.0	90	> th	dose independent	rect.	21	16
74	99.54	precipitation	0.1	90	< th	dose independent	rect.	21	16
75	99.54	precipitation	0.1	90	< th	dose dependent	rect.	21	16
80	99.66	wind	9.0	90	< th	dose independent	rect.	21	16
81	99.69	precipitation	0.1	90	< th	dose independent	rect.	13	8
83	99.69	precipitation	0.1	90	< th	dose dependent	rect.	13	8
91	99.87	wind	1.0	90	> th	dose independent	rect.	13	8
119	100.66	temperature	25.0	90	> th	dose independent	rect.	13	8
146	101.36	temperature	30.0	270	< th	dose independent	rect.	7	6
147	101.38	temperature	30.0	270	< th	dose independent	rect.	17	20
150	101.47	atmosphere	1015.0	10	< th	dose independent	rect.	21	17
151	101.48	atmosphere	1015.0	270	< th	dose independent	rect.	8	15
154	101.52	temperature	30.0	270	< th	dose independent	rect.	18	22
169	101.69	wind	7.0	270	< th	dose independent	rect.	12	20
173	101.74	temperature	25.0	90	> th	dose dependent	rect.	13	20
198	102.08	humidity	50.0	90	> th	dose independent	rect.	21	16
214	102.27	humidity	60.0	270	> th	dose independent	rect.	8	15
225	102.37	atmosphere	995.0	270	> th	dose independent	rect.	8	15
226	102.38	radiation	1.0	270	> th	dose independent	rect.	12	19
273	102.75	temperature	10.0	90	> th	dose dependent	rect.	21	16
275	102.78	humidity	60.0	270	> th	dose independent	rect.	8	17
279	102.83	radiation	40.0	270	< th	dose independent	rect.	18	19
300	103.02	temperature	10.0	270	> th	dose dependent	rect.	3	15
314	103.19	precipitation	0.1	10	< th	dose independent	rect.	13	8
315	103.19	precipitation	0.1	10	< th	dose dependent	rect.	13	8
320	103.25	humidity	60.0	270	> th	dose independent	rect.	8	5
328	103.28	atmosphere	1000.0	270	> th	dose independent	rect.	8	4
330	103.31	radiation	1.0	270	> th	dose independent	rect.	11	21
338	103.36	temperature	10.0	90	> th	dose dependent	rect.	13	20
339	103.37	temperature	10.0	1440	> th	dose independent	rect.	14	8
342	103.37	temperature	10.0	1440	> th	dose independent	rect.	22	16
345	103.37	atmosphere	995.0	1440	> th	dose independent	rect.	22	16
351	103.44	wind	7.0	270	< th	dose independent	rect.	23	9
372	103.53	temperature	10.0	270	> th	dose independent	rect.	8	4
374	103.53	atmosphere	1015.0	270	< th	dose independent	rect.	8	4
375	103.53	temperature	10.0	270	> th	dose independent	rect.	12	20
377	103.54	radiation	1.0	270	> th	dose independent	rect.	8	4
378	103.54	radiation	40.0	270	< th	dose dependent	rect.	8	18
380	103.55	precipitation	0.1	270	< th	dose independent	rect.	8	4
381	103.55	precipitation	0.1	270	< th	dose dependent	rect.	8	4
391	103.61	temperature	10.0	270	> th	dose independent	rect.	23	9
392	103.61	temperature	30.0	270	< th	dose independent	rect.	23	9
393	103.61	humidity	50.0	270	> th	dose independent	rect.	23	9
395	103.61	atmosphere	995.0	270	> th	dose independent	rect.	23	9
396	103.61	temperature	10.0	270	> th	dose independent	rect.	8	15
397	103.63	radiation	40.0	270	< th	dose independent	rect.	23	9
427	103.74	wind	9.0	270	< th	dose independent	rect.	8	4
462	103.86	wind	9.0	90	< th	dose dependent	rect.	13	8
490	103.94	precipitation	0.1	270	< th	dose independent	rect.	23	9
493	103.94	precipitation	0.1	270	< th	dose dependent	rect.	23	9
498	103.97	wind	9.0	90	< th	dose independent	rect.	13	22
499	103.98	wind	1.0	270	> th	dose independent	rect.	8	4
510	104.03	humidity	60.0	270	> th	dose independent	rect.	18	19
514	104.06	precipitation	0.1	270	< th	dose independent	rect.	12	20
516	104.06	precipitation	0.1	270	< th	dose dependent	rect.	12	20
555	104.21	radiation	40.0	30	< th	dose independent	rect.	14	7
566	104.29	humidity	90.0	90	< th	dose independent	rect.	13	8
606	104.48	temperature	30.0	270	> th	dose independent	rect.	12	4
651	104.71	humidity	90.0	90	< th	dose independent	rect.	9	4
653	104.71	wind	1.0	270	> th	dose independent	rect.	8	15
667	104.79	radiation	40.0	90	< th	dose independent	rect.	11	2
716	105.05	temperature	10.0	90	> th	dose independent	rect.	11	2
717	105.05	atmosphere	995.0	90	> th	dose independent	rect.	11	2
718	105.05	atmosphere	1015.0	90	< th	dose independent	rect.	11	2
719	105.05	precipitation	0.1	90	< th	dose independent	rect.	11	2
720	105.05	precipitation	0.1	270	< th	dose independent	rect.	8	15
721	105.05	temperature	10.0	90	> th	dose independent	rect.	13	22
722	105.05	precipitation	0.1	90	< th	dose dependent	rect.	11	2
724	105.05	precipitation	0.1	270	< th	dose dependent	rect.	8	15
730	105.07	radiation	1.0	270	> th	dose independent	rect.	12	7
742	105.09	radiation	1.0	90	> th	dose independent	rect.	11	2
748	105.11	humidity	60.0	90	> th	dose independent	rect.	11	2
754	105.12	humidity	50.0	270	> th	dose dependent	rect.	8	15
762	105.14	humidity	90.0	90	< th	dose dependent	rect.	13	8
770	105.17	wind	9.0	90	< th	dose independent	rect.	11	2
771	105.17	humidity	90.0	90	< th	dose independent	rect.	11	2
782	105.19	atmosphere	995.0	270	> th	dose independent	rect.	18	18
789	105.23	wind	9.0	270	< th	dose independent	rect.	8	15
813	105.28	wind	9.0	270	< th	dose dependent	rect.	12	6
864	105.45	atmosphere	995.0	270	> th	dose dependent	rect.	8	4
876	105.49	humidity	70.0	270	< th	dose independent	rect.	12	19
880	105.51	humidity	70.0	270	< th	dose independent	rect.	12	8
896	105.53	temperature	30.0	90	< th	dose independent	rect.	11	2
906	105.56	humidity	50.0	270	> th	dose dependent	rect.	8	17
909	105.58	humidity	60.0	90	> th	dose independent	rect.	10	4
921	105.61	radiation	1.0	270	> th	dose dependent	rect.	12	20
935	105.67	humidity	90.0	270	< th	dose independent	rect.	12	6
954	105.76	humidity	60.0	10	> th	dose independent	rect.	11	3