Os03g0215900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 67kD chloroplastic RNA-binding protein, P67.
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Os03g0215900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 67kD chloroplastic RNA-binding protein, P67.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.72 | 0.427 | 10 | 1.6 | 1.88 | 1.48 | -2.02 | -1.22 | 0.0171 | 18.9 | 48.69 | 5205 | -- | -- |
| 83.16 | 0.425 | 10 | 1.71 | 1.86 | 1.06 | -2.08 | -- | 0.0172 | 18.9 | 49.4 | 5195 | -- | -- |
| 92.37 | 0.448 | 10 | 1.65 | 1.88 | 1.37 | -- | -1.19 | 0.0155 | 18.8 | 49.3 | 5410 | -- | -- |
| 92.78 | 0.449 | 10 | 1.62 | 1.88 | 1.01 | -- | -- | 0.0491 | 18.7 | 50.95 | 5410 | -- | -- |
| 178.81 | 0.623 | 9.97 | 1.76 | -- | 1.91 | -- | -1.52 | -0.0302 | -- | 95 | 496 | -- | -- |
| 94.16 | 0.455 | 10 | 1.92 | 1.91 | -- | -1.82 | -- | -0.018 | 18.9 | -- | -- | -- | -- |
| 102.62 | 0.474 | 10 | 1.96 | 1.9 | -- | -- | -- | -0.0217 | 18.8 | -- | -- | -- | -- |
| 181.85 | 0.628 | 10 | 1.87 | -- | 2.03 | -- | -- | -0.0929 | -- | 103.7 | 518 | -- | -- |
| 156.31 | 0.582 | 10 | -- | 1.87 | 1.8 | -- | -- | -0.0166 | 18.7 | 51 | 5411 | -- | -- |
| 292.49 | 0.799 | 10 | 1.91 | -- | -- | -- | -- | -0.0585 | -- | -- | -- | -- | -- |
| 203.38 | 0.667 | 10.1 | -- | 1.88 | -- | -- | -- | -0.239 | 18.9 | -- | -- | -- | -- |
| 274.19 | 0.771 | 10 | -- | -- | 2.08 | -- | -- | -0.3 | -- | 122.6 | 543 | -- | -- |
| 389.06 | 0.921 | 10 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 4 | 79.95 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 12 |
| 5 | 79.96 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 14 |
| 9 | 80.10 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 23 | 1 |
| 13 | 80.40 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 10 |
| 16 | 80.68 | temperature | 20 | 90 | < th | dose independent | sin | 15 | NA |
| 18 | 80.70 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 13 |
| 22 | 80.75 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 13 |
| 44 | 81.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 67 | 81.24 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 74 | 81.28 | radiation | 40 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 77 | 81.31 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 93 | 81.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 22 | 5 |
| 96 | 81.44 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 14 |
| 110 | 81.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 114 | 81.54 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 1 |
| 122 | 81.57 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 123 | 81.58 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 21 | 4 |
| 127 | 81.59 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |
| 140 | 81.65 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 147 | 81.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 173 | 81.84 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 23 | 4 |
| 198 | 81.92 | humidity | 50 | 720 | > th | dose independent | rect. | 24 | 15 |
| 213 | 81.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 220 | 81.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 6 |
| 245 | 82.07 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 286 | 82.22 | humidity | 50 | 720 | > th | dose independent | rect. | 9 | 20 |
| 291 | 82.24 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 3 |
| 293 | 82.24 | humidity | 50 | 720 | > th | dose independent | rect. | 11 | 10 |
| 319 | 82.31 | humidity | 50 | 720 | > th | dose independent | rect. | 9 | 13 |
| 329 | 82.37 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 358 | 82.48 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 6 |
| 455 | 82.77 | temperature | 20 | 90 | > th | dose independent | sin | 15 | NA |
| 456 | 82.77 | humidity | 50 | 720 | > th | dose independent | rect. | 7 | 15 |
| 465 | 82.80 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 477 | 82.83 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 558 | 83.02 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 17 | 14 |
| 587 | 83.08 | wind | 1 | 90 | > th | dose independent | rect. | 23 | 4 |
| 667 | 83.25 | temperature | 20 | 30 | < th | dose independent | rect. | 14 | 18 |
| 689 | 83.28 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 692 | 83.29 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 786 | 83.43 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 7 |
| 795 | 83.44 | humidity | 50 | 720 | > th | dose independent | rect. | 7 | 22 |
| 826 | 83.50 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 834 | 83.52 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 868 | 83.56 | humidity | 50 | 720 | > th | dose independent | sin | 5 | NA |
| 869 | 83.56 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 875 | 83.57 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 896 | 83.60 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 20 |
| 915 | 83.61 | radiation | 20 | 30 | < th | dose dependent | rect. | 23 | 10 |
| 953 | 83.68 | wind | 5 | 270 | < th | dose independent | rect. | 23 | 1 |
| 956 | 83.69 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 978 | 83.73 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 993 | 83.76 | temperature | 10 | 270 | > th | dose independent | rect. | 23 | 1 |
| 995 | 83.76 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 1 |
| 996 | 83.76 | humidity | 50 | 270 | > th | dose independent | rect. | 23 | 1 |
| 999 | 83.76 | atmosphere | 995 | 270 | > th | dose independent | rect. | 23 | 1 |
| 1000 | 83.76 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 1 |