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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0215600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0309) R2 : 2.15e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00643 (0.065) R2dN8 : 2.77e-05 R2N8 : 2.15e-05
σ : 0.581
deviance : 155.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.65 0.537 2.92 0.0834 0.136 3.88 0.228 -6.08 0.0306 0.537 1007 30 15 1.45
135.68 0.543 2.91 0.0902 0.135 3.37 0.371 -- 0.0598 0.481 1006 38 15 1.33
130.76 0.533 2.93 0.0735 0.139 4.1 -- -6.72 0.0201 1.07 1007 30 15 1.47
135.8 0.543 2.92 0.0506 0.143 3.1 -- -- 0.0242 1.39 1006 34 15.1 1.28
131.92 0.535 2.92 0.0768 -- 4.04 -- -6.83 0.0309 -- 1007 30 15.1 1.45
153.91 0.582 2.93 0.0533 0.104 -- 0.336 -- -0.0014 23 -- -- -- --
154.39 0.582 2.93 0.0397 0.102 -- -- -- -0.00251 22.9 -- -- -- --
137 0.545 2.92 0.0529 -- 3.02 -- -- 0.0243 -- 1006 35 15.1 1.26
135.85 0.543 2.92 -- 0.142 3.09 -- -- 0.0171 1.41 1006 35 15.1 1.26
155.04 0.582 2.93 0.0419 -- -- -- -- -0.00178 -- -- -- -- --
154.43 0.581 2.93 -- 0.103 -- -- -- -0.00693 23 -- -- -- --
137.07 0.545 2.92 -- -- 3.02 -- -- 0.0182 -- 1006 35 15.2 1.19
155.08 0.581 2.93 -- -- -- -- -- -0.00643 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.87 atmosphere 1005.0 30 > th dose dependent rect. 15 1
2 135.34 temperature 25.0 10 < th dose dependent rect. 16 1
5 135.62 temperature 25.0 10 < th dose dependent rect. 14 3
22 137.45 temperature 25.0 10 < th dose independent rect. 15 1
36 139.05 atmosphere 1005.0 30 > th dose independent rect. 15 1
42 140.34 temperature 20.0 90 < th dose dependent rect. 12 4
43 140.35 temperature 20.0 10 < th dose dependent rect. 12 4
49 140.53 radiation 1.0 90 < th dose independent rect. 14 1
50 140.53 radiation 1.0 90 < th dose dependent rect. 14 1
53 140.93 temperature 20.0 90 < th dose independent rect. 12 4
89 141.61 radiation 1.0 10 < th dose independent rect. 16 1
94 141.84 temperature 30.0 10 < th dose dependent rect. 12 5
101 142.37 radiation 1.0 10 < th dose dependent rect. 16 1
115 142.90 wind 5.0 10 > th dose independent rect. 10 1
119 142.90 wind 5.0 10 > th dose dependent rect. 10 1
127 143.01 wind 7.0 90 > th dose dependent rect. 8 1
129 143.10 wind 7.0 90 > th dose dependent rect. 4 5
131 143.17 wind 7.0 90 > th dose independent rect. 8 1
132 143.17 wind 7.0 90 > th dose independent rect. 4 5
136 143.30 humidity 90.0 90 > th dose independent rect. 8 1
143 143.53 humidity 90.0 90 > th dose dependent rect. 8 1
153 144.03 radiation 20.0 10 < th dose independent rect. 14 2
183 144.29 wind 9.0 90 > th dose dependent rect. 21 13
193 144.49 temperature 30.0 270 < th dose dependent rect. 12 1
223 145.05 radiation 30.0 10 < th dose dependent rect. 14 2
227 145.22 humidity 60.0 30 > th dose independent rect. 15 1
251 145.64 temperature 15.0 720 > th dose dependent rect. 10 1
252 145.66 temperature 20.0 270 < th dose independent rect. 12 1
269 145.83 atmosphere 1000.0 90 < th dose dependent rect. 14 9
289 146.01 humidity 50.0 10 > th dose dependent rect. 15 1
310 146.24 temperature 10.0 10 > th dose dependent rect. 11 11
362 146.54 atmosphere 1000.0 30 < th dose dependent rect. 15 5
375 146.57 atmosphere 1000.0 90 < th dose independent rect. 14 9
384 146.60 atmosphere 1000.0 30 < th dose dependent rect. 15 3
390 146.62 temperature 30.0 90 > th dose independent rect. 8 1
415 146.66 atmosphere 1000.0 10 < th dose independent rect. 15 7
426 146.68 atmosphere 1000.0 10 < th dose dependent rect. 15 1
433 146.69 temperature 30.0 720 < th dose dependent rect. 15 1
446 146.73 atmosphere 1000.0 10 < th dose independent rect. 15 3
447 146.73 wind 9.0 10 > th dose dependent rect. 13 3
459 146.75 atmosphere 1000.0 10 < th dose independent rect. 15 1
471 146.76 temperature 30.0 90 > th dose dependent rect. 8 1
506 146.84 temperature 15.0 30 > th dose independent rect. 16 23
562 147.08 temperature 30.0 720 < th dose independent rect. 13 3
606 147.23 atmosphere 1000.0 10 < th dose independent rect. 15 15
643 147.32 wind 5.0 720 < th dose independent rect. 1 3
678 147.36 wind 9.0 10 < th dose independent rect. 16 23
681 147.38 wind 3.0 30 > th dose independent rect. 15 1
693 147.40 precipitation 0.1 30 < th dose independent rect. 16 23
699 147.40 precipitation 0.1 30 < th dose dependent rect. 16 23
703 147.42 atmosphere 995.0 30 > th dose independent rect. 15 1
706 147.44 temperature 30.0 10 > th dose independent rect. 10 1
728 147.55 temperature 20.0 720 > th dose independent rect. 10 1
765 147.58 wind 7.0 10 > th dose independent rect. 13 3
801 147.66 radiation 20.0 10 < th dose independent rect. 8 8
804 147.66 radiation 30.0 10 < th dose dependent rect. 8 8
814 147.68 humidity 80.0 10 > th dose dependent rect. 16 1
838 147.73 temperature 10.0 720 > th dose dependent rect. 9 9
857 147.78 temperature 20.0 90 > th dose independent rect. 10 11
863 147.80 temperature 10.0 30 > th dose independent rect. 15 1
865 147.80 atmosphere 1010.0 30 < th dose independent rect. 15 1
867 147.80 precipitation 0.1 30 < th dose independent rect. 15 1
870 147.80 precipitation 0.1 30 < th dose dependent rect. 15 1
884 147.85 radiation 1.0 10 < th dose independent rect. 6 11
888 147.86 precipitation 0.1 270 < th dose independent rect. 16 13
892 147.86 precipitation 0.1 270 < th dose dependent rect. 16 13
894 147.88 atmosphere 1010.0 720 < th dose independent rect. 10 1
924 147.94 humidity 90.0 720 < th dose independent rect. 10 1
950 147.96 temperature 30.0 270 < th dose dependent rect. 11 12
954 147.98 wind 9.0 720 < th dose dependent rect. 24 11
955 147.99 wind 9.0 30 < th dose independent rect. 15 1
960 148.00 temperature 15.0 1440 > th dose independent rect. 23 2
974 148.00 wind 1.0 10 > th dose dependent rect. 15 1