Os03g0215400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Box protein (MADS box protein MADS1).
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Os03g0215400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Box protein (MADS box protein MADS1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 487.2 | 1.04 | 8.22 | 10 | 2.72 | -1.58 | 2.86 | -14.7 | 2.1 | 6.12 | 1.193 | 4327 | 18 | 11 |
| 628.13 | 1.17 | 8.06 | 8.53 | 3.04 | -0.689 | 3.24 | -- | 2.17 | 6.36 | 17.99 | 17281 | 18.6 | 11.9 |
| 505.87 | 1.05 | 8.24 | 9.92 | 2.73 | -1.57 | -- | -14.7 | 2.07 | 5.99 | 1.477 | 4328 | 18 | 11 |
| 626.52 | 1.17 | 7.99 | 8.32 | 2.97 | -0.554 | -- | -- | 2.08 | 6.05 | 18.3 | 15808 | 19.9 | 12.5 |
| 888.2 | 1.39 | 8.26 | 10.1 | -- | -1.71 | -- | -14.7 | 2.17 | -- | 1.754 | 4327 | 18 | 10.8 |
| 640.34 | 1.19 | 7.98 | 7.8 | 2.82 | -- | 3.05 | -- | 2.13 | 6.16 | -- | -- | -- | -- |
| 662.53 | 1.21 | 7.98 | 7.82 | 2.84 | -- | -- | -- | 2.11 | 6.02 | -- | -- | -- | -- |
| 813.91 | 1.33 | 8.01 | 7.87 | -- | 1.78 | -- | -- | 2.28 | -- | 81.17 | 15446 | 23.7 | 13.7 |
| 2235.78 | 2.2 | 8.11 | -- | 3.23 | -0.673 | -- | -- | 1.68 | 5.74 | 26.22 | 2879 | 22.1 | 12.9 |
| 1080.9 | 1.54 | 8.03 | 7.91 | -- | -- | -- | -- | 2.18 | -- | -- | -- | -- | -- |
| 2276.25 | 2.23 | 8.18 | -- | 2.96 | -- | -- | -- | 1.24 | 5.89 | -- | -- | -- | -- |
| 1015.59 | 1.48 | 8.49 | -- | -- | 6.62 | -- | -- | -0.00486 | -- | 90.25 | 47520 | 20.5 | 8.68 |
| 2730.27 | 2.44 | 8.23 | -- | -- | -- | -- | -- | 1.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 442.79 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 2 | 444.61 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 7 | 448.03 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 8 | 448.18 | temperature | 20 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 9 | 448.23 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 28 | 450.36 | temperature | 20 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 41 | 451.13 | temperature | 20 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 43 | 451.15 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 81 | 451.36 | temperature | 20 | 43200 | < th | dose dependent | sin | 8 | NA |
| 301 | 452.36 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 316 | 452.51 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 319 | 452.55 | temperature | 20 | 43200 | < th | dose independent | sin | 0 | NA |
| 417 | 453.53 | temperature | 20 | 43200 | > th | dose independent | sin | 0 | NA |
| 511 | 454.83 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 515 | 454.87 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 527 | 455.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 541 | 455.18 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 654 | 456.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 730 | 456.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 21 |
| 732 | 456.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 792 | 456.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 819 | 457.08 | temperature | 20 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 843 | 457.25 | temperature | 20 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 869 | 457.50 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 874 | 457.54 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 881 | 457.55 | temperature | 20 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 891 | 457.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 892 | 457.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 927 | 457.73 | temperature | 20 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 944 | 457.79 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 964 | 457.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 6 |