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Os03g0214000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Diphosphonucleotide phosphatase 1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.016) R2 : 0.00155
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0283 (0.0337) R2dN8 : 0.002 R2N8 : 0.00155
σ : 0.301
deviance : 41.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.92 0.248 11.7 -0.36 0.335 -0.121 0.043 2.21 -0.116 21.7 20 1794 -- --
32.15 0.266 11.7 -0.19 0.541 -0.303 0.511 -- -0.048 22.5 30 1700 -- --
27.91 0.246 11.7 -0.362 0.337 -0.123 -- 2.21 -0.116 21.7 20 1772 -- --
32.83 0.267 11.7 -0.163 0.476 -0.354 -- -- -0.0294 22.2 97.67 28 -- --
34.3 0.273 11.7 -0.358 -- -0.144 -- 2.31 -0.113 -- 20 1950 -- --
34.09 0.274 11.7 -0.184 0.323 -- 0.364 -- -0.0484 21.4 -- -- -- --
34.49 0.275 11.7 -0.196 0.328 -- -- -- -0.0478 20.9 -- -- -- --
33.93 0.271 11.7 -0.196 -- -0.502 -- -- -0.0779 -- 10.01 1019 -- --
33.41 0.269 11.7 -- 0.508 -0.438 -- -- -0.0434 22.6 103.2 109 -- --
40.63 0.298 11.7 -0.196 -- -- -- -- -0.0501 -- -- -- -- --
35.5 0.279 11.7 -- 0.328 -- -- -- -0.026 20.9 -- -- -- --
35.02 0.276 11.7 -- -- -0.498 -- -- -0.0693 -- 9.997 1015 -- --
41.64 0.301 11.7 -- -- -- -- -- -0.0283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.53 radiation 10.0 720 < th dose dependent rect. 22 17
4 26.65 radiation 10.0 720 < th dose independent rect. 22 18
15 26.93 radiation 10.0 720 < th dose independent rect. 5 18
24 27.13 radiation 10.0 720 < th dose independent sin 6 NA
54 27.42 radiation 10.0 720 < th dose dependent sin 5 NA
74 27.62 radiation 10.0 720 < th dose dependent rect. 5 16
78 27.64 radiation 30.0 1440 < th dose independent rect. 16 5
80 27.64 radiation 10.0 720 < th dose dependent rect. 5 18
89 27.71 radiation 30.0 1440 < th dose independent rect. 16 10
90 27.72 precipitation 0.1 43200 > th dose independent rect. 19 1
94 27.74 precipitation 0.1 43200 < th dose independent rect. 19 1
96 27.74 precipitation 0.1 43200 < th dose dependent rect. 19 1
105 27.83 radiation 30.0 1440 < th dose independent rect. 16 12
108 27.84 radiation 30.0 1440 < th dose independent rect. 16 14
125 27.92 radiation 10.0 720 < th dose dependent rect. 1 15
134 27.96 precipitation 0.1 43200 > th dose dependent rect. 19 1
175 28.15 radiation 10.0 720 < th dose dependent sin 23 NA
177 28.16 precipitation 0.1 4320 > th dose independent rect. 23 7
179 28.16 precipitation 0.1 4320 > th dose dependent rect. 23 7
191 28.19 precipitation 0.1 4320 < th dose independent rect. 23 7
192 28.19 precipitation 0.1 4320 < th dose dependent rect. 23 7
214 28.27 radiation 10.0 270 < th dose independent rect. 4 11
225 28.30 radiation 40.0 1440 > th dose dependent rect. 14 19
230 28.32 radiation 1.0 14400 > th dose independent rect. 7 6
248 28.34 radiation 1.0 14400 < th dose independent rect. 7 6
256 28.35 humidity 80.0 43200 > th dose independent rect. 13 1
286 28.39 humidity 60.0 43200 < th dose dependent rect. 19 2
287 28.39 radiation 1.0 1440 < th dose dependent rect. 18 23
290 28.41 precipitation 0.1 14400 > th dose independent rect. 13 1
293 28.41 humidity 90.0 14400 > th dose dependent rect. 1 18
296 28.42 radiation 1.0 4320 < th dose dependent rect. 6 3
309 28.44 radiation 10.0 720 < th dose independent sin 22 NA
318 28.45 radiation 10.0 720 < th dose dependent rect. 21 10
334 28.48 precipitation 0.1 14400 < th dose independent rect. 13 1
337 28.48 precipitation 0.1 14400 < th dose dependent rect. 13 1
346 28.49 humidity 60.0 43200 < th dose independent rect. 19 6
374 28.53 radiation 40.0 4320 < th dose independent rect. 15 17
378 28.54 radiation 10.0 270 < th dose independent sin 2 NA
379 28.54 atmosphere 1005.0 14400 > th dose independent rect. 16 1
390 28.55 radiation 40.0 14400 < th dose independent rect. 17 15
405 28.57 radiation 1.0 4320 > th dose independent rect. 6 3
406 28.57 humidity 90.0 14400 > th dose dependent sin 3 NA
412 28.58 humidity 80.0 43200 < th dose independent rect. 13 1
416 28.58 radiation 40.0 1440 > th dose dependent rect. 14 2
437 28.59 radiation 40.0 14400 < th dose independent rect. 5 3
438 28.59 humidity 60.0 43200 > th dose independent rect. 19 4
445 28.59 humidity 90.0 14400 > th dose dependent rect. 1 9
451 28.60 radiation 1.0 4320 < th dose independent rect. 6 3
456 28.60 radiation 1.0 4320 < th dose dependent rect. 6 6
461 28.61 atmosphere 1005.0 14400 > th dose independent rect. 12 6
462 28.61 atmosphere 1005.0 14400 < th dose independent rect. 12 6
475 28.62 radiation 40.0 14400 < th dose independent rect. 3 5
488 28.63 atmosphere 1005.0 14400 < th dose independent rect. 16 1
493 28.63 radiation 10.0 270 > th dose dependent rect. 10 3
496 28.63 radiation 10.0 1440 < th dose dependent rect. 16 22
505 28.65 atmosphere 1005.0 14400 < th dose independent rect. 13 2
532 28.67 precipitation 0.1 4320 > th dose independent rect. 19 11
539 28.67 radiation 10.0 1440 < th dose dependent rect. 15 19
541 28.68 atmosphere 1005.0 14400 > th dose independent rect. 13 1
547 28.68 radiation 10.0 270 < th dose independent rect. 8 23
549 28.68 radiation 1.0 14400 < th dose dependent rect. 19 10
557 28.69 precipitation 0.1 4320 < th dose independent rect. 19 11
562 28.69 precipitation 0.1 4320 < th dose dependent rect. 19 11
567 28.70 radiation 10.0 270 < th dose independent no NA NA
569 28.70 atmosphere 1005.0 14400 > th dose independent rect. 12 3
600 28.72 radiation 10.0 270 < th dose independent rect. 12 23
639 28.74 humidity 90.0 14400 > th dose dependent rect. 5 4
644 28.75 wind 9.0 43200 < th dose independent rect. 10 1
654 28.75 radiation 1.0 14400 < th dose dependent rect. 23 6
666 28.76 radiation 40.0 14400 < th dose independent rect. 20 12
669 28.76 humidity 80.0 43200 > th dose dependent rect. 13 1
690 28.78 precipitation 0.1 43200 > th dose dependent rect. 5 1
691 28.78 precipitation 0.1 14400 > th dose dependent rect. 13 1
694 28.78 humidity 80.0 43200 > th dose dependent rect. 10 5
695 28.78 humidity 60.0 43200 < th dose dependent rect. 19 5
707 28.79 humidity 80.0 43200 > th dose dependent rect. 10 1
720 28.80 precipitation 0.1 43200 < th dose independent rect. 5 1
726 28.80 radiation 10.0 1440 < th dose independent rect. 15 19
731 28.80 precipitation 0.1 43200 < th dose dependent rect. 5 1
734 28.80 humidity 90.0 14400 > th dose dependent rect. 5 9
762 28.82 precipitation 0.1 43200 > th dose independent rect. 5 1
769 28.82 radiation 30.0 1440 > th dose dependent rect. 16 1
823 28.84 humidity 90.0 14400 > th dose dependent rect. 12 20
826 28.85 radiation 10.0 43200 > th dose independent rect. 5 1
832 28.85 humidity 80.0 43200 > th dose independent rect. 10 6
853 28.85 radiation 10.0 1440 < th dose dependent rect. 12 22
878 28.87 radiation 10.0 1440 < th dose independent rect. 15 16
879 28.87 humidity 90.0 14400 > th dose dependent rect. 24 3
901 28.88 temperature 15.0 43200 < th dose dependent rect. 3 1
925 28.89 humidity 90.0 14400 > th dose dependent rect. 19 13
948 28.90 radiation 10.0 1440 < th dose dependent sin 12 NA
970 28.91 radiation 20.0 43200 > th dose independent rect. 17 14