Os03g0213900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0213900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.43 | 0.284 | 11.1 | -0.329 | 0.586 | -1.13 | 0.58 | -1.33 | 0.219 | 2.36 | 23.21 | 71 | -- | -- |
| 38.52 | 0.289 | 11.1 | -0.46 | 0.544 | -0.939 | 0.279 | -- | 0.207 | 2.57 | 23.18 | 105 | -- | -- |
| 37.18 | 0.284 | 11.1 | -0.384 | 0.579 | -1.15 | -- | -1.06 | 0.221 | 2.58 | 22.84 | 111 | -- | -- |
| 38.55 | 0.289 | 11.1 | -0.484 | 0.562 | -0.949 | -- | -- | 0.195 | 2.59 | 23.06 | 104 | -- | -- |
| 53.33 | 0.34 | 11.1 | -0.213 | -- | -0.724 | -- | -1.4 | 0.299 | -- | 24.87 | 1147 | -- | -- |
| 49.26 | 0.329 | 11.1 | -0.277 | 0.445 | -- | 0.204 | -- | 0.321 | 2.84 | -- | -- | -- | -- |
| 49.4 | 0.329 | 11.1 | -0.282 | 0.446 | -- | -- | -- | 0.319 | 2.9 | -- | -- | -- | -- |
| 53.5 | 0.341 | 11.1 | -0.475 | -- | -0.698 | -- | -- | 0.172 | -- | 26.52 | 1101 | -- | -- |
| 44.09 | 0.311 | 11.1 | -- | 0.536 | -0.737 | -- | -- | 0.269 | 2.48 | 23.1 | 61 | -- | -- |
| 60.89 | 0.365 | 11.1 | -0.263 | -- | -- | -- | -- | 0.331 | -- | -- | -- | -- | -- |
| 51.5 | 0.336 | 11.1 | -- | 0.441 | -- | -- | -- | 0.351 | 2.89 | -- | -- | -- | -- |
| 58.57 | 0.356 | 11.1 | -- | -- | -0.482 | -- | -- | 0.267 | -- | 26.6 | 1077 | -- | -- |
| 62.71 | 0.37 | 11.1 | -- | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.13 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 2 | 37.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 3 | 37.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 33 | 37.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 50 | 37.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 51 | 37.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 54 | 37.78 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 60 | 37.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 89 | 37.90 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 165 | 38.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 280 | 38.70 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 10 |
| 284 | 38.73 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 312 | 38.84 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 20 |
| 313 | 38.84 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 364 | 39.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 371 | 39.08 | temperature | 20 | 30 | < th | dose independent | rect. | 8 | 23 |
| 375 | 39.09 | temperature | 20 | 30 | < th | dose independent | rect. | 10 | 21 |
| 421 | 39.21 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 14 |
| 472 | 39.36 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 475 | 39.37 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 481 | 39.38 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 482 | 39.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 486 | 39.39 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 495 | 39.40 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 23 |
| 497 | 39.40 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 503 | 39.41 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 509 | 39.41 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 511 | 39.42 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 524 | 39.44 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 549 | 39.47 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 644 | 39.60 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |