Os03g0213700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF647 family protein.
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Os03g0213700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF647 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.81 | 0.229 | 11.4 | -0.871 | 0.333 | 0.155 | -0.317 | 3.37 | 0.19 | 20.7 | 29.99 | 266 | -- | -- |
| 24.97 | 0.233 | 11.3 | -0.594 | 0.321 | 0.508 | -0.402 | -- | 0.222 | 20.4 | 30 | 230 | -- | -- |
| 24.01 | 0.228 | 11.4 | -0.86 | 0.339 | 0.192 | -- | 3.12 | 0.186 | 20.8 | 29.7 | 277 | -- | -- |
| 25.44 | 0.235 | 11.3 | -0.562 | 0.341 | 0.54 | -- | -- | 0.211 | 20.7 | 29.92 | 273 | -- | -- |
| 29.92 | 0.255 | 11.4 | -0.893 | -- | 0.0372 | -- | 3.5 | 0.189 | -- | 29.9 | 224 | -- | -- |
| 32.06 | 0.265 | 11.3 | -0.648 | 0.263 | -- | -0.22 | -- | 0.241 | 22.3 | -- | -- | -- | -- |
| 32.17 | 0.266 | 11.3 | -0.641 | 0.264 | -- | -- | -- | 0.241 | 22.9 | -- | -- | -- | -- |
| 31.26 | 0.26 | 11.3 | -0.591 | -- | 0.411 | -- | -- | 0.217 | -- | 29.9 | 201 | -- | -- |
| 33.58 | 0.27 | 11.3 | -- | 0.372 | 0.635 | -- | -- | 0.266 | 20.3 | 29.96 | 297 | -- | -- |
| 36.5 | 0.282 | 11.3 | -0.636 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 43 | 0.307 | 11.3 | -- | 0.26 | -- | -- | -- | 0.312 | 22.7 | -- | -- | -- | -- |
| 40.14 | 0.295 | 11.3 | -- | -- | 0.496 | -- | -- | 0.285 | -- | 30.1 | 227 | -- | -- |
| 47.15 | 0.321 | 11.3 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 2 | 23.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 5 | 23.38 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 9 | 23.40 | temperature | 15 | 720 | > th | dose dependent | sin | 0 | NA |
| 14 | 23.44 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 19 | 23.47 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 31 | 23.51 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 33 | 23.52 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 55 | 23.55 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 85 | 23.65 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 91 | 23.67 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 116 | 23.73 | temperature | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 164 | 23.82 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 183 | 23.90 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 280 | 23.91 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 284 | 23.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 428 | 24.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 431 | 24.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 505 | 24.33 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 16 |
| 522 | 24.37 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 526 | 24.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 558 | 24.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 601 | 24.45 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 608 | 24.45 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 624 | 24.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 627 | 24.47 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 646 | 24.48 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 743 | 24.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 795 | 24.64 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 803 | 24.65 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 851 | 24.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 856 | 24.72 | radiation | 10 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 865 | 24.74 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 4 |
| 890 | 24.76 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 13 |
| 898 | 24.77 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |