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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0212800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-glucosidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.25 (0.0492) R2 : 0.677
β1 : -4.37 (0.18) R2dD : 0.433 R2D : 0.329
β2 : 2.36 (0.131) R2dC : 0.253 R2C : 0.101
β3 : -2.38 (0.219) R2dE : 0.096 R2E : -0.0356
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.25 (0.106) R2dN8 : 0.137 R2N8 : -0.0149
σ : 0.918
deviance : 388.22
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_____
C
peak time of C : 3.78
E
wheather : humidity
threshold : 82
memory length : 881
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 13.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
367.26 0.9 6.25 -4.4 2.24 -2.42 2.56 0.791 -1.25 3.35 82.01 812 14.1 --
367.08 0.892 6.24 -4.33 2.3 -2.45 2.71 -- -1.23 3.46 82.05 844 13.6 --
382.89 0.911 6.26 -4.47 2.29 -2.37 -- 1.84 -1.29 3.72 82.99 879 13.6 --
388.22 0.918 6.25 -4.37 2.36 -2.38 -- -- -1.25 3.78 82 881 13.3 --
489.4 1.03 6.26 -4.57 -- -2.67 -- -2.73 -1.13 -- 51 1871 17.1 --
469.57 1.02 6.2 -4.34 1.86 -- 2.62 -- -1.05 3.49 -- -- -- --
489.18 1.04 6.21 -4.39 1.9 -- -- -- -1.07 3.84 -- -- -- --
467.66 1.01 6.19 -4.72 -- -2.84 -- -- -0.879 -- 52.01 2006 18.6 --
875.36 1.38 6.15 -- 2.2 -2.53 -- -- -0.915 4.14 88 860 11.6 --
687.94 1.23 6.21 -4.31 -- -- -- -- -1.02 -- -- -- -- --
996.07 1.48 6.1 -- 1.82 -- -- -- -0.578 3.87 -- -- -- --
813.95 1.33 6.02 -- -- -3.9 -- -- -0.125 -- 55.01 35201 19.5 --
1177.23 1.6 6.11 -- -- -- -- -- -0.538 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 367.45 humidity 70 720 > th dose dependent rect. 14 9
7 369.85 humidity 80 720 > th dose independent rect. 12 10
17 371.11 humidity 80 720 > th dose independent rect. 14 8
31 372.74 humidity 70 720 > th dose dependent sin 18 NA
113 377.99 humidity 80 720 > th dose independent sin 19 NA
115 378.03 humidity 90 720 < th dose independent rect. 18 6
193 381.27 humidity 90 720 < th dose dependent rect. 19 4
197 381.52 humidity 80 720 < th dose independent rect. 12 10
245 383.23 humidity 80 1440 > th dose independent rect. 2 15
253 383.60 humidity 80 1440 > th dose independent rect. 4 13
270 383.80 humidity 90 720 < th dose dependent rect. 18 7
297 384.50 humidity 80 1440 < th dose independent rect. 2 15
303 384.56 humidity 80 1440 < th dose independent rect. 4 13
353 385.94 humidity 80 1440 > th dose independent sin 1 NA
364 386.38 humidity 80 1440 < th dose independent sin 2 NA
365 386.38 humidity 90 720 < th dose dependent rect. 18 13
390 386.80 radiation 10 720 < th dose dependent rect. 14 3
582 390.20 humidity 80 1440 > th dose independent rect. 2 20
586 390.26 humidity 80 1440 > th dose independent rect. 21 20
667 391.52 humidity 80 720 < th dose independent sin 18 NA
710 392.03 humidity 60 720 > th dose dependent rect. 14 18
728 392.25 humidity 70 720 > th dose dependent rect. 12 20
732 392.31 temperature 25 720 > th dose dependent rect. 18 3
781 392.95 humidity 90 720 > th dose independent rect. 20 3
899 394.53 humidity 70 720 > th dose independent rect. 19 8
964 395.38 humidity 80 1440 > th dose independent rect. 11 4
981 395.53 humidity 80 1440 > th dose dependent rect. 11 5
991 395.64 humidity 70 1440 > th dose dependent rect. 8 8
1000 395.71 radiation 10 720 < th dose dependent rect. 14 11