Os03g0211900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os03g0211900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.65 | 0.386 | 10.1 | -0.162 | 2.15 | 0.871 | -0.706 | -1.55 | -0.187 | 22.1 | 0.8655 | 323 | -- | -- |
| 71.06 | 0.393 | 10.1 | -0.122 | 2.13 | 0.844 | -0.213 | -- | -0.175 | 22 | 5.289 | 308 | -- | -- |
| 68.9 | 0.387 | 10.1 | -0.139 | 2.11 | 0.887 | -- | -1.17 | -0.189 | 22.2 | 0.4632 | 355 | -- | -- |
| 71.22 | 0.393 | 10.1 | -0.115 | 2.14 | 0.867 | -- | -- | -0.173 | 22.1 | 3.6 | 312 | -- | -- |
| 163.32 | 0.595 | 10.1 | -0.348 | -- | 2.17 | -- | -0.855 | -0.437 | -- | -93.97 | 977 | -- | -- |
| 80.57 | 0.421 | 10 | -0.0899 | 2.03 | -- | -0.383 | -- | -0.106 | 21.1 | -- | -- | -- | -- |
| 81.08 | 0.422 | 10 | -0.0769 | 2.03 | -- | -- | -- | -0.106 | 21.2 | -- | -- | -- | -- |
| 165.03 | 0.598 | 10 | -0.276 | -- | 2.13 | -- | -- | -0.403 | -- | -79.99 | 977 | -- | -- |
| 71.56 | 0.394 | 10.1 | -- | 2.13 | 0.859 | -- | -- | -0.162 | 22.1 | 3.67 | 312 | -- | -- |
| 320.5 | 0.837 | 9.98 | -0.0705 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 81.24 | 0.422 | 10 | -- | 2.03 | -- | -- | -- | -0.0972 | 21.2 | -- | -- | -- | -- |
| 167.02 | 0.602 | 10 | -- | -- | 2.11 | -- | -- | -0.367 | -- | -52.31 | 972 | -- | -- |
| 320.63 | 0.836 | 9.98 | -- | -- | -- | -- | -- | -0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.37 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 2 | 59.02 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 5 | 59.63 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 20 |
| 8 | 59.80 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 10 | 59.93 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 20 |
| 17 | 60.48 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 20 |
| 18 | 60.59 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 20 | 60.63 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 24 | 60.83 | radiation | 1.0 | 90 | < th | dose independent | sin | 7 | NA |
| 28 | 60.94 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 20 |
| 29 | 60.98 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 31 | 61.01 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 34 | 61.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 47 | 61.43 | radiation | 1.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 52 | 61.51 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 53 | 61.52 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 61 | 61.65 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 66 | 61.76 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 21 |
| 87 | 61.91 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 20 |
| 98 | 61.93 | radiation | 20.0 | 270 | < th | dose independent | rect. | 6 | 2 |
| 111 | 62.10 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 20 |
| 114 | 62.16 | radiation | 1.0 | 90 | > th | dose independent | sin | 6 | NA |
| 129 | 62.31 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 134 | 62.35 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 11 | 19 |
| 135 | 62.35 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 11 | 19 |
| 139 | 62.38 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 11 |
| 144 | 62.41 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 145 | 62.42 | temperature | 15.0 | 90 | > th | dose independent | rect. | 11 | 19 |
| 150 | 62.52 | radiation | 10.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 155 | 62.65 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 167 | 62.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 168 | 62.74 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 169 | 62.74 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 170 | 62.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 5 |
| 172 | 62.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 184 | 62.90 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 187 | 62.92 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 190 | 62.93 | wind | 9.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 205 | 63.05 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 208 | 63.06 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 211 | 63.08 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 222 | 63.09 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 229 | 63.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 6 | 2 |
| 235 | 63.21 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 24 | 6 |
| 238 | 63.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 21 |
| 241 | 63.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 253 | 63.29 | temperature | 15.0 | 90 | > th | dose independent | rect. | 23 | 7 |
| 266 | 63.37 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 18 |
| 267 | 63.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 268 | 63.37 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 273 | 63.40 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 7 |
| 275 | 63.40 | temperature | 30.0 | 90 | < th | dose independent | rect. | 23 | 7 |
| 276 | 63.40 | humidity | 50.0 | 90 | > th | dose independent | rect. | 23 | 7 |
| 279 | 63.40 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 7 |
| 280 | 63.40 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 7 |
| 283 | 63.40 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 17 |
| 298 | 63.45 | wind | 9.0 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 317 | 63.59 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 318 | 63.60 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 7 |
| 321 | 63.60 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 325 | 63.62 | humidity | 70.0 | 270 | > th | dose independent | rect. | 4 | 6 |
| 328 | 63.63 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 329 | 63.64 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 5 |
| 331 | 63.64 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 11 | 19 |
| 333 | 63.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 3 |
| 342 | 63.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 3 |
| 343 | 63.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 3 |
| 354 | 63.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 356 | 63.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 357 | 63.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 359 | 63.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 360 | 63.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 361 | 63.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 21 |
| 364 | 63.74 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 366 | 63.74 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 24 | 6 |
| 368 | 63.75 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 24 | 6 |
| 370 | 63.76 | radiation | 30.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 372 | 63.78 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 4 |
| 373 | 63.78 | wind | 7.0 | 10 | < th | dose independent | rect. | 6 | 5 |
| 399 | 63.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 408 | 63.86 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 417 | 63.89 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 430 | 63.97 | wind | 9.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 435 | 64.01 | humidity | 70.0 | 90 | > th | dose independent | rect. | 6 | 11 |
| 438 | 64.04 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 4 |
| 439 | 64.04 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 496 | 64.20 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 5 |
| 497 | 64.20 | wind | 9.0 | 10 | < th | dose independent | rect. | 11 | 19 |
| 498 | 64.20 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 5 |
| 500 | 64.21 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 503 | 64.21 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 504 | 64.21 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 5 |
| 506 | 64.21 | temperature | 10.0 | 10 | > th | dose independent | rect. | 11 | 19 |
| 510 | 64.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 21 |
| 514 | 64.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 5 |
| 516 | 64.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 518 | 64.25 | temperature | 15.0 | 10 | > th | dose independent | rect. | 24 | 6 |
| 519 | 64.25 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 528 | 64.27 | wind | 9.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 530 | 64.27 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 531 | 64.27 | humidity | 50.0 | 10 | > th | dose independent | rect. | 24 | 6 |
| 535 | 64.27 | radiation | 20.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 539 | 64.27 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 7 |
| 540 | 64.27 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 18 |
| 542 | 64.27 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 585 | 64.33 | humidity | 80.0 | 270 | < th | dose independent | rect. | 9 | 8 |
| 588 | 64.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 591 | 64.34 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 592 | 64.34 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 607 | 64.37 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 614 | 64.37 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 638 | 64.44 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 668 | 64.50 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 680 | 64.54 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 708 | 64.63 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 715 | 64.65 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 5 |
| 718 | 64.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 737 | 64.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 10 |
| 738 | 64.70 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 739 | 64.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 10 |
| 744 | 64.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 764 | 64.76 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 11 | 19 |
| 766 | 64.77 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 784 | 64.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 791 | 64.79 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 9 |
| 792 | 64.80 | humidity | 90.0 | 10 | > th | dose independent | rect. | 2 | 4 |
| 793 | 64.80 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 804 | 64.81 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 805 | 64.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 806 | 64.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 809 | 64.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 821 | 64.82 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 5 |
| 828 | 64.84 | wind | 9.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 837 | 64.87 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 849 | 64.89 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 863 | 64.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 8 |
| 864 | 64.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 14 |
| 869 | 64.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 872 | 64.91 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 889 | 64.95 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 24 | 6 |
| 893 | 64.95 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 895 | 64.96 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 4 |
| 932 | 65.03 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 18 |
| 934 | 65.03 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 937 | 65.04 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 5 |
| 941 | 65.04 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 955 | 65.07 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 17 |
| 958 | 65.07 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 959 | 65.07 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 965 | 65.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 966 | 65.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 968 | 65.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 969 | 65.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 973 | 65.09 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 975 | 65.09 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 983 | 65.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 10 |
| 985 | 65.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 14 |
| 986 | 65.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 14 |
| 987 | 65.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 988 | 65.09 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 994 | 65.09 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 15 |
| 997 | 65.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 2 |
| 1000 | 65.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 2 |