Os03g0210900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0210900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.3 | 0.283 | 12.6 | -0.736 | 0.53 | -0.493 | 0.696 | 1.56 | -0.371 | 6.07 | 77.47 | 919 | -- | -- |
| 39.89 | 0.294 | 12.6 | -0.631 | 0.523 | -0.478 | 1.08 | -- | -0.364 | 6.35 | 78 | 906 | -- | -- |
| 37.14 | 0.284 | 12.6 | -0.734 | 0.566 | -0.419 | -- | 1.65 | -0.371 | 5.67 | 77 | 838 | -- | -- |
| 41.69 | 0.303 | 12.6 | -0.603 | 0.688 | -0.238 | -- | -- | -0.331 | 3.54 | 78.69 | 851 | -- | -- |
| 49.4 | 0.327 | 12.7 | -0.748 | -- | -0.506 | -- | 1.81 | -0.381 | -- | 77.06 | 1117 | -- | -- |
| 44.44 | 0.313 | 12.6 | -0.569 | 0.473 | -- | 0.294 | -- | -0.333 | 4.64 | -- | -- | -- | -- |
| 44.54 | 0.313 | 12.6 | -0.572 | 0.474 | -- | -- | -- | -0.334 | 4.27 | -- | -- | -- | -- |
| 53.01 | 0.339 | 12.6 | -0.59 | -- | -0.487 | -- | -- | -0.346 | -- | 77.8 | 1198 | -- | -- |
| 50.04 | 0.331 | 12.6 | -- | 0.662 | -0.228 | -- | -- | -0.299 | 3.69 | 84.06 | 1486 | -- | -- |
| 56.66 | 0.352 | 12.6 | -0.553 | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
| 53.16 | 0.341 | 12.6 | -- | 0.463 | -- | -- | -- | -0.271 | 4.29 | -- | -- | -- | -- |
| 60.69 | 0.363 | 12.6 | -- | -- | -0.431 | -- | -- | -0.312 | -- | 85 | 1138 | -- | -- |
| 64.72 | 0.375 | 12.6 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.28 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 4 | 35.48 | humidity | 80.0 | 720 | > th | dose independent | rect. | 24 | 19 |
| 6 | 35.51 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 14 | 35.56 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 33 | 35.68 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 39 | 35.70 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 16 |
| 113 | 35.92 | humidity | 90.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 120 | 35.93 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 140 | 35.99 | humidity | 50.0 | 720 | > th | dose dependent | sin | 1 | NA |
| 147 | 36.00 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 6 |
| 178 | 36.10 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 180 | 36.10 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 192 | 36.12 | radiation | 1.0 | 720 | > th | dose independent | rect. | 12 | 7 |
| 203 | 36.12 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 214 | 36.14 | humidity | 90.0 | 720 | < th | dose independent | rect. | 12 | 13 |
| 234 | 36.19 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 15 |
| 248 | 36.22 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 8 |
| 307 | 36.32 | humidity | 80.0 | 720 | > th | dose independent | sin | 2 | NA |
| 325 | 36.35 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 19 |
| 329 | 36.36 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 9 |
| 348 | 36.39 | radiation | 1.0 | 720 | > th | dose independent | sin | 17 | NA |
| 357 | 36.41 | humidity | 90.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 369 | 36.44 | radiation | 1.0 | 720 | > th | dose independent | rect. | 10 | 7 |
| 414 | 36.52 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 8 |
| 418 | 36.53 | humidity | 50.0 | 720 | > th | dose dependent | no | NA | NA |
| 463 | 36.61 | humidity | 90.0 | 720 | < th | dose independent | sin | 17 | NA |
| 484 | 36.63 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 526 | 36.72 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 550 | 36.74 | humidity | 50.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 589 | 36.78 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 609 | 36.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 616 | 36.82 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 667 | 36.89 | radiation | 1.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 688 | 36.93 | precipitation | 0.1 | 270 | < th | dose independent | sin | 8 | NA |
| 691 | 36.93 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 8 | NA |
| 720 | 36.97 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 800 | 37.04 | radiation | 1.0 | 720 | < th | dose independent | rect. | 24 | 19 |
| 807 | 37.04 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 812 | 37.05 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 819 | 37.06 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 832 | 37.06 | humidity | 90.0 | 720 | < th | dose dependent | no | NA | NA |
| 837 | 37.06 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 889 | 37.12 | radiation | 1.0 | 720 | < th | dose independent | rect. | 22 | 19 |
| 896 | 37.12 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 910 | 37.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 980 | 37.20 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 19 |