Os03g0209400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Got1-like protein family protein.
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Os03g0209400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Got1-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.71 | 0.167 | 11.6 | 0.451 | 0.201 | -0.406 | 0.028 | -0.915 | 0.257 | 22.7 | 10.86 | 79 | -- | -- |
| 12.99 | 0.168 | 11.5 | 0.563 | 0.198 | -0.343 | 0.165 | -- | 0.283 | 22.6 | 23.19 | 51 | -- | -- |
| 12.71 | 0.166 | 11.6 | 0.447 | 0.201 | -0.407 | -- | -0.938 | 0.256 | 22.7 | 11.86 | 79 | -- | -- |
| 13.08 | 0.168 | 11.5 | 0.56 | 0.197 | -0.361 | -- | -- | 0.283 | 22.3 | 23.29 | 49 | -- | -- |
| 14.48 | 0.178 | 11.5 | 0.491 | -- | -0.472 | -- | -0.673 | 0.284 | -- | 17.99 | 29 | -- | -- |
| 14.84 | 0.181 | 11.6 | 0.503 | 0.277 | -- | 0.283 | -- | 0.234 | 0.483 | -- | -- | -- | -- |
| 15.17 | 0.182 | 11.6 | 0.492 | 0.276 | -- | -- | -- | 0.233 | 0.314 | -- | -- | -- | -- |
| 14.87 | 0.18 | 11.5 | 0.595 | -- | -0.478 | -- | -- | 0.311 | -- | 19.37 | 4 | -- | -- |
| 20.8 | 0.214 | 11.6 | -- | 0.219 | -0.216 | -- | -- | 0.199 | 23.5 | 24.2 | 79 | -- | -- |
| 19.97 | 0.209 | 11.5 | 0.502 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 21.56 | 0.217 | 11.6 | -- | 0.283 | -- | -- | -- | 0.178 | 0.405 | -- | -- | -- | -- |
| 23.3 | 0.226 | 11.6 | -- | -- | -0.36 | -- | -- | 0.214 | -- | 24.2 | 79 | -- | -- |
| 26.61 | 0.241 | 11.6 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 4 | 12.27 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 16 | 12.32 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 18 | 12.33 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 29 | 12.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 39 | 12.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 41 | 12.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 20 | 22 |
| 81 | 12.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 93 | 12.51 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 96 | 12.52 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 117 | 12.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 138 | 12.57 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 161 | 12.60 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 181 | 12.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 190 | 12.63 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 10 |
| 208 | 12.64 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 214 | 12.65 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 221 | 12.65 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 243 | 12.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 272 | 12.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 275 | 12.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 284 | 12.70 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 293 | 12.71 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 295 | 12.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 314 | 12.72 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 315 | 12.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 9 |
| 366 | 12.75 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 441 | 12.78 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 2 |
| 476 | 12.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 486 | 12.80 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 21 |
| 603 | 12.84 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |
| 623 | 12.84 | radiation | 10 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 637 | 12.85 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 10 | 4 |
| 738 | 12.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 741 | 12.88 | temperature | 30 | 90 | < th | dose independent | rect. | 20 | 22 |
| 745 | 12.88 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 746 | 12.88 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 832 | 12.90 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 834 | 12.90 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 19 |
| 840 | 12.90 | atmosphere | 1015 | 270 | < th | dose dependent | sin | 22 | NA |
| 844 | 12.90 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 856 | 12.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 884 | 12.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |