Os03g0208600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0208600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.61 | 0.715 | 5.63 | 1.18 | 3.24 | -0.95 | 0.475 | 0.211 | 0.233 | 19.1 | 29.17 | 119 | -- | -- |
| 230.91 | 0.708 | 5.62 | 1.21 | 3.22 | -0.945 | 0.496 | -- | 0.23 | 19.1 | 29 | 132 | -- | -- |
| 231.49 | 0.709 | 5.63 | 1.19 | 3.22 | -0.959 | -- | 0.142 | 0.223 | 19.1 | 29.1 | 138 | -- | -- |
| 231.44 | 0.709 | 5.63 | 1.19 | 3.21 | -0.954 | -- | -- | 0.223 | 19.1 | 28.9 | 137 | -- | -- |
| 544.65 | 1.09 | 5.51 | 0.853 | -- | -2.79 | -- | 0.684 | -0.205 | -- | 28.2 | 487 | -- | -- |
| 265.17 | 0.763 | 5.61 | 1.38 | 3.55 | -- | 0.8 | -- | 0.293 | 18.7 | -- | -- | -- | -- |
| 266.79 | 0.765 | 5.61 | 1.37 | 3.55 | -- | -- | -- | 0.295 | 18.7 | -- | -- | -- | -- |
| 534.51 | 1.08 | 5.62 | 0.884 | -- | -2.93 | -- | -- | -0.111 | -- | 28.2 | 493 | -- | -- |
| 268.68 | 0.763 | 5.64 | -- | 3.22 | -1.04 | -- | -- | 0.119 | 19.1 | 29.07 | 142 | -- | -- |
| 924.65 | 1.42 | 5.54 | 1.29 | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
| 316.37 | 0.832 | 5.65 | -- | 3.53 | -- | -- | -- | 0.142 | 18.7 | -- | -- | -- | -- |
| 547.77 | 1.09 | 5.65 | -- | -- | -3.12 | -- | -- | -0.241 | -- | 28.25 | 507 | -- | -- |
| 968.5 | 1.45 | 5.57 | -- | -- | -- | -- | -- | 0.0815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 2 | 224.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 15 |
| 6 | 225.02 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 20 | 225.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 24 | 225.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 49 | 226.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 63 | 227.15 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 65 | 227.20 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 68 | 227.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 73 | 227.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 197 | 229.96 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 15 |
| 221 | 230.46 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 306 | 231.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 308 | 231.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 325 | 231.87 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 358 | 232.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 496 | 233.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 702 | 235.18 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 870 | 236.06 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 900 | 236.21 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 20 |