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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0206800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0454) R2 : 1.88e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00886 (0.0956) R2dN8 : 2.43e-05 R2N8 : 1.88e-05
σ : 0.855
deviance : 335.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
318.6 0.839 2.82 -0.312 0.0652 1.11 0.198 -0.746 0.211 14.7 48 4587 -- --
319.26 0.832 2.82 -0.359 0.0609 1.11 0.21 -- 0.205 15.1 49.51 4590 -- --
318.73 0.831 2.82 -0.307 0.0651 1.11 -- -0.767 0.212 14.4 48 4579 -- --
319.44 0.832 2.82 -0.364 0.0591 1.09 -- -- 0.195 14.3 49 4579 -- --
318.96 0.832 2.82 -0.304 -- 1.1 -- -0.761 0.211 -- 48 4545 -- --
333.03 0.856 2.87 -0.308 0.0282 -- -0.336 -- -0.045 3.89 -- -- -- --
333.3 0.855 2.87 -0.303 0.0419 -- -- -- -0.0431 6.97 -- -- -- --
319.62 0.833 2.82 -0.356 -- 1.08 -- -- 0.192 -- 48 4503 -- --
322.87 0.837 2.81 -- 0.0559 1.04 -- -- 0.221 13.2 46.01 4505 -- --
333.4 0.853 2.87 -0.302 -- -- -- -- -0.0424 -- -- -- -- --
335.72 0.857 2.86 -- 0.0388 -- -- -- -0.00941 7.46 -- -- -- --
323.05 0.837 2.81 -- -- 1.02 -- -- 0.216 -- 46.99 4485 -- --
335.8 0.855 2.86 -- -- -- -- -- -0.00886 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.39 humidity 90.0 720 > th dose dependent rect. 7 4
8 310.15 humidity 90.0 720 < th dose independent rect. 7 4
9 311.01 humidity 90.0 720 > th dose independent rect. 7 5
10 311.06 temperature 15.0 4320 < th dose dependent rect. 14 3
16 311.25 humidity 90.0 720 > th dose dependent rect. 9 1
18 311.30 humidity 90.0 4320 > th dose independent rect. 17 3
19 311.41 humidity 90.0 720 < th dose independent rect. 7 6
23 311.80 temperature 15.0 4320 < th dose independent rect. 14 3
24 311.83 temperature 15.0 4320 < th dose dependent rect. 11 7
41 312.01 radiation 1.0 720 < th dose dependent rect. 7 1
46 312.05 humidity 70.0 4320 > th dose dependent rect. 18 1
48 312.08 humidity 80.0 4320 < th dose independent rect. 17 3
51 312.09 humidity 90.0 720 > th dose dependent rect. 6 14
84 312.74 humidity 50.0 14400 < th dose dependent rect. 17 18
87 312.78 radiation 1.0 270 < th dose dependent rect. 6 5
95 312.93 humidity 90.0 4320 > th dose dependent rect. 19 1
96 312.94 temperature 15.0 4320 < th dose independent rect. 12 1
120 313.22 humidity 90.0 720 > th dose independent rect. 9 1
126 313.27 precipitation 0.1 720 > th dose independent rect. 24 2
127 313.27 precipitation 0.1 720 > th dose dependent rect. 24 2
129 313.29 temperature 15.0 4320 > th dose independent rect. 14 3
144 313.41 humidity 50.0 4320 > th dose dependent rect. 18 1
176 313.72 temperature 15.0 4320 < th dose independent rect. 12 5
211 313.96 temperature 15.0 4320 < th dose dependent rect. 19 2
224 314.02 radiation 1.0 720 < th dose independent rect. 7 1
237 314.11 radiation 1.0 720 < th dose independent rect. 6 5
240 314.13 humidity 90.0 4320 < th dose dependent rect. 18 1
249 314.23 humidity 90.0 4320 > th dose independent rect. 12 1
251 314.23 humidity 90.0 4320 > th dose dependent rect. 12 10
252 314.24 humidity 90.0 4320 > th dose independent rect. 11 10
259 314.29 humidity 70.0 14400 < th dose dependent rect. 19 13
266 314.35 temperature 15.0 4320 > th dose independent rect. 12 5
268 314.37 humidity 50.0 4320 > th dose dependent rect. 15 5
289 314.45 temperature 15.0 4320 < th dose dependent sin 21 NA
297 314.52 humidity 80.0 4320 < th dose independent rect. 16 7
301 314.53 humidity 90.0 4320 > th dose independent rect. 9 12
313 314.57 wind 9.0 90 > th dose dependent rect. 9 2
325 314.59 humidity 90.0 1440 > th dose dependent rect. 16 1
328 314.62 humidity 90.0 720 > th dose independent rect. 6 11
349 314.70 humidity 90.0 4320 < th dose dependent rect. 15 4
351 314.72 radiation 20.0 4320 > th dose independent rect. 6 1
388 314.81 humidity 90.0 4320 > th dose dependent rect. 15 7
394 314.83 radiation 20.0 4320 > th dose dependent rect. 6 1
437 314.92 humidity 90.0 14400 > th dose dependent rect. 21 1
447 314.98 humidity 90.0 720 > th dose independent rect. 6 13
487 315.18 humidity 90.0 4320 < th dose dependent rect. 15 8
531 315.33 humidity 90.0 4320 > th dose dependent rect. 12 1
536 315.35 wind 3.0 90 > th dose dependent rect. 9 2
543 315.37 humidity 90.0 14400 > th dose independent rect. 21 1
550 315.39 wind 7.0 10 > th dose dependent rect. 11 1
554 315.40 precipitation 0.1 4320 < th dose independent rect. 13 1
555 315.40 humidity 80.0 4320 < th dose dependent rect. 15 1
556 315.40 precipitation 0.1 4320 < th dose dependent rect. 13 1
567 315.46 temperature 15.0 4320 > th dose independent rect. 11 2
591 315.54 humidity 90.0 14400 < th dose independent rect. 20 1
594 315.55 precipitation 0.1 4320 > th dose dependent rect. 13 1
596 315.56 humidity 50.0 4320 > th dose dependent rect. 15 1
598 315.57 humidity 50.0 14400 < th dose independent rect. 12 1
599 315.57 humidity 90.0 4320 < th dose independent rect. 11 10
614 315.61 precipitation 0.1 720 > th dose dependent rect. 5 6
626 315.65 wind 3.0 90 > th dose dependent rect. 7 4
630 315.67 precipitation 0.1 720 > th dose independent rect. 5 6
643 315.70 humidity 70.0 4320 > th dose independent rect. 15 1
664 315.77 precipitation 0.1 4320 > th dose independent rect. 13 1
679 315.80 radiation 30.0 4320 < th dose independent rect. 24 7
689 315.82 humidity 50.0 14400 < th dose dependent rect. 12 1
694 315.83 radiation 30.0 4320 < th dose independent rect. 4 3
702 315.85 humidity 50.0 14400 < th dose independent rect. 17 18
707 315.86 humidity 90.0 4320 < th dose independent rect. 7 12
722 315.88 humidity 60.0 14400 < th dose dependent rect. 18 15
763 315.98 humidity 90.0 4320 > th dose dependent sin 21 NA
785 316.02 precipitation 0.1 720 > th dose independent rect. 7 4
791 316.02 precipitation 0.1 720 > th dose dependent rect. 7 4
831 316.13 humidity 90.0 90 > th dose dependent rect. 10 4
841 316.17 wind 7.0 10 > th dose independent rect. 11 1
843 316.17 radiation 30.0 4320 < th dose independent rect. 17 14
849 316.19 humidity 90.0 270 < th dose independent rect. 7 11
850 316.20 wind 5.0 1440 > th dose dependent rect. 3 1
878 316.23 precipitation 0.1 720 > th dose independent rect. 20 7
881 316.23 precipitation 0.1 720 > th dose dependent rect. 20 7
923 316.30 humidity 70.0 4320 < th dose independent rect. 15 1
943 316.35 humidity 60.0 14400 < th dose dependent rect. 18 2
956 316.36 radiation 30.0 4320 < th dose independent rect. 6 1
968 316.39 humidity 90.0 4320 > th dose independent sin 21 NA
971 316.39 humidity 90.0 720 < th dose independent rect. 6 13
998 316.44 humidity 80.0 4320 < th dose dependent rect. 14 13
999 316.44 humidity 80.0 4320 < th dose dependent rect. 14 16