Os03g0206300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ACR175Wp.
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Os03g0206300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ACR175Wp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.78 | 0.409 | 9.68 | -0.816 | 0.95 | -0.316 | -0.219 | 1.75 | -0.503 | 5.77 | 20.7 | 3865 | -- | -- |
| 83.01 | 0.424 | 9.74 | -0.965 | 1.01 | -0.501 | 0.153 | -- | -0.524 | 5.58 | 20.31 | 9993 | -- | -- |
| 75.76 | 0.405 | 9.68 | -0.759 | 0.949 | -0.304 | -- | 1.84 | -0.479 | 5.79 | 21.3 | 3869 | -- | -- |
| 80.3 | 0.417 | 9.75 | -1 | 0.925 | -0.697 | -- | -- | -0.562 | 5.81 | 18.9 | 10040 | -- | -- |
| 121.97 | 0.514 | 9.69 | -0.612 | -- | -0.28 | -- | 2.05 | -0.422 | -- | 22.3 | 3825 | -- | -- |
| 87.03 | 0.437 | 9.79 | -1.51 | 0.94 | -- | -0.129 | -- | -0.756 | 5.86 | -- | -- | -- | -- |
| 87.07 | 0.437 | 9.79 | -1.51 | 0.939 | -- | -- | -- | -0.755 | 5.87 | -- | -- | -- | -- |
| 125.5 | 0.522 | 9.76 | -0.923 | -- | -0.741 | -- | -- | -0.565 | -- | 15.5 | 24789 | -- | -- |
| 85.31 | 0.43 | 9.7 | -- | 0.934 | -1.3 | -- | -- | -0.382 | 5.8 | 16.68 | 47471 | -- | -- |
| 132.82 | 0.539 | 9.8 | -1.48 | -- | -- | -- | -- | -0.734 | -- | -- | -- | -- | -- |
| 147.03 | 0.567 | 9.75 | -- | 0.917 | -- | -- | -- | -0.587 | 5.95 | -- | -- | -- | -- |
| 130.89 | 0.533 | 9.71 | -- | -- | -1.32 | -- | -- | -0.332 | -- | 15.94 | 47520 | -- | -- |
| 190.59 | 0.644 | 9.77 | -- | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.57 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 70.54 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 5 | 70.87 | wind | 3 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 6 | 70.90 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 7 | 70.98 | wind | 3 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 8 | 71.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 10 | 71.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 11 | 71.17 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 15 | 71.47 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 16 | 71.50 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 18 | 71.57 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 20 | 71.66 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 21 | 71.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 25 | 71.75 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 29 | 71.81 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 30 | 71.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 33 | 71.88 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 39 | 71.95 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 47 | 72.10 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 51 | 72.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 55 | 72.19 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 56 | 72.19 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 59 | 72.20 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 84 | 72.41 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 88 | 72.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 93 | 72.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 100 | 72.51 | radiation | 10 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 134 | 72.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 145 | 72.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 146 | 72.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 148 | 72.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 149 | 72.61 | radiation | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 181 | 72.69 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 190 | 72.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 195 | 72.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 196 | 72.73 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 204 | 72.77 | radiation | 10 | 43200 | > th | dose independent | sin | 9 | NA |
| 227 | 72.80 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 228 | 72.80 | humidity | 80 | 43200 | < th | dose dependent | sin | 10 | NA |
| 271 | 72.91 | humidity | 80 | 43200 | < th | dose independent | sin | 11 | NA |
| 272 | 72.91 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 302 | 72.97 | radiation | 20 | 43200 | > th | dose independent | sin | 5 | NA |
| 305 | 72.98 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 331 | 73.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 345 | 73.02 | wind | 1 | 43200 | < th | dose dependent | sin | 17 | NA |
| 373 | 73.03 | radiation | 30 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 375 | 73.04 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 376 | 73.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 377 | 73.04 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 396 | 73.05 | humidity | 80 | 43200 | > th | dose independent | sin | 11 | NA |
| 404 | 73.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 411 | 73.07 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 431 | 73.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 463 | 73.12 | radiation | 40 | 43200 | > th | dose independent | sin | 16 | NA |
| 490 | 73.15 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 520 | 73.18 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 521 | 73.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 550 | 73.21 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 588 | 73.25 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 604 | 73.26 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 702 | 73.27 | radiation | 20 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 751 | 73.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 773 | 73.34 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 810 | 73.35 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 822 | 73.37 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 844 | 73.40 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 859 | 73.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 874 | 73.45 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 894 | 73.47 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 940 | 73.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 972 | 73.52 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |