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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0205700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BTB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0353) R2 : 0.536
β1 : -1.68 (0.142) R2dD : 0.192 R2D : 0.286
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.19 (0.267) R2dE : 0.187 R2E : 0.339
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.478 (0.077) R2dN8 : 0.0383 R2N8 : 0.0128
σ : 0.655
deviance : 197.94
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 65.2
memory length : 1730
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.11 0.629 3.52 -2.45 0.508 0.644 -1.8 -5.09 -0.539 11.5 52.16 1462 -- --
194.86 0.65 3.52 -2.08 0.594 1.42 -1.52 -- -0.472 12.4 58.03 1404 -- --
189.47 0.641 3.5 -2.38 0.54 0.792 -- -6.11 -0.54 11 53.13 1492 -- --
194.34 0.649 3.55 -2.27 0.349 2.72 -- -- -0.515 9.98 56.54 49 -- --
195.24 0.651 3.45 -1.88 -- 0.885 -- -7.91 -0.379 -- 59.19 1736 -- --
227.48 0.707 3.55 -2.34 0.536 -- -1.95 -- -0.568 11.6 -- -- -- --
243.37 0.731 3.55 -2.42 0.557 -- -- -- -0.578 10.8 -- -- -- --
197.94 0.655 3.56 -1.68 -- 3.19 -- -- -0.478 -- 65.2 1730 -- --
314.77 0.826 3.46 -- 0.393 3.79 -- -- -0.226 9.18 56.67 85 -- --
262.6 0.757 3.56 -2.43 -- -- -- -- -0.582 -- -- -- -- --
398.14 0.933 3.49 -- 0.578 -- -- -- -0.308 11.1 -- -- -- --
256.8 0.746 3.46 -- -- 3.38 -- -- -0.127 -- 68.72 1772 -- --
418.98 0.955 3.5 -- -- -- -- -- -0.311 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.95 radiation 30 1440 < th dose independent rect. 16 15
2 178.08 radiation 30 1440 < th dose independent rect. 16 9
3 178.38 radiation 30 1440 < th dose independent rect. 16 4
16 180.93 radiation 10 1440 < th dose independent rect. 15 16
18 182.57 radiation 10 1440 < th dose independent rect. 16 1
19 183.05 atmosphere 1015 43200 > th dose independent rect. 19 1
20 183.07 radiation 10 720 < th dose dependent rect. 3 11
23 183.98 radiation 20 10 > th dose dependent rect. 15 21
26 184.45 radiation 10 720 < th dose dependent rect. 21 17
29 184.80 humidity 60 43200 < th dose dependent rect. 19 9
32 184.96 radiation 10 720 < th dose independent sin 11 NA
38 185.32 atmosphere 1015 43200 < th dose independent rect. 18 2
39 185.33 humidity 60 43200 < th dose dependent rect. 19 2
40 185.41 radiation 40 14400 < th dose independent rect. 6 2
43 185.53 radiation 20 10 > th dose dependent rect. 7 5
62 185.73 radiation 40 14400 < th dose independent rect. 17 15
64 185.75 radiation 1 1440 > th dose dependent rect. 16 15
65 185.75 radiation 1 1440 > th dose dependent rect. 15 17
68 185.82 radiation 1 10 > th dose dependent rect. 13 23
74 186.00 radiation 40 14400 < th dose independent rect. 24 8
75 186.01 radiation 20 10 > th dose dependent rect. 13 23
79 186.14 radiation 10 1440 < th dose dependent rect. 16 21
95 186.37 radiation 40 90 < th dose independent rect. 3 12
97 186.50 radiation 10 720 < th dose dependent sin 5 NA
103 186.57 radiation 40 14400 < th dose independent rect. 2 6
105 186.58 radiation 1 1440 > th dose dependent rect. 15 21
108 186.64 radiation 40 1440 > th dose dependent rect. 13 23
122 186.98 radiation 40 1440 < th dose dependent rect. 15 17
147 187.24 radiation 10 720 < th dose independent rect. 3 7
152 187.36 temperature 20 720 < th dose independent rect. 5 1
163 187.51 radiation 40 10 < th dose independent rect. 3 12
196 187.86 radiation 10 720 < th dose independent rect. 3 10
197 187.86 radiation 10 1440 < th dose dependent sin 12 NA
201 187.96 radiation 1 10 > th dose dependent rect. 15 23
206 188.05 radiation 40 10 < th dose independent rect. 3 23
207 188.05 radiation 40 10 > th dose dependent rect. 9 3
227 188.07 radiation 10 720 < th dose independent rect. 3 5
229 188.12 radiation 10 720 < th dose dependent rect. 5 9
235 188.17 temperature 15 43200 < th dose dependent sin 0 NA
237 188.17 temperature 15 43200 < th dose dependent rect. 12 12
238 188.18 temperature 15 43200 < th dose dependent rect. 3 19
243 188.22 temperature 15 43200 < th dose dependent rect. 4 15
254 188.26 temperature 15 43200 < th dose dependent sin 19 NA
257 188.26 humidity 50 10 > th dose dependent rect. 3 23
275 188.34 radiation 10 720 < th dose independent rect. 20 17
295 188.41 temperature 15 43200 < th dose dependent rect. 10 6
300 188.43 radiation 10 720 < th dose independent rect. 2 22
316 188.48 atmosphere 1015 43200 > th dose dependent rect. 12 9
318 188.49 temperature 15 43200 < th dose dependent rect. 5 3
319 188.49 atmosphere 1015 43200 > th dose dependent rect. 13 5
330 188.55 radiation 1 14400 < th dose independent rect. 10 3
355 188.61 radiation 40 90 > th dose dependent rect. 13 23
358 188.63 temperature 15 43200 < th dose dependent rect. 13 1
366 188.65 radiation 1 1440 > th dose dependent sin 12 NA
372 188.67 radiation 40 1440 > th dose dependent sin 12 NA
389 188.71 temperature 15 43200 < th dose dependent rect. 21 1
390 188.71 radiation 1 14400 < th dose dependent rect. 10 3
408 188.75 radiation 10 1440 < th dose independent rect. 16 9
419 188.76 atmosphere 1015 43200 > th dose dependent rect. 19 2
428 188.78 radiation 20 10 > th dose dependent rect. 11 1
509 188.93 temperature 15 43200 < th dose dependent rect. 11 23
511 188.94 temperature 15 43200 < th dose dependent no NA NA
539 189.00 radiation 1 14400 > th dose independent rect. 10 3
557 189.02 temperature 15 43200 < th dose dependent rect. 15 23
558 189.02 temperature 15 43200 < th dose dependent rect. 17 23
657 189.18 radiation 10 720 < th dose independent rect. 20 14
707 189.31 temperature 15 43200 < th dose dependent rect. 18 1
753 189.44 radiation 20 1440 > th dose dependent rect. 11 1
770 189.49 atmosphere 1015 43200 > th dose dependent rect. 17 1
808 189.59 radiation 10 720 < th dose dependent rect. 2 22
821 189.64 humidity 60 43200 < th dose dependent rect. 19 14
853 189.73 radiation 40 1440 < th dose independent rect. 11 1
896 189.81 radiation 1 1440 > th dose dependent rect. 11 1
953 190.01 atmosphere 1015 43200 > th dose independent rect. 14 6
958 190.03 humidity 50 43200 < th dose independent rect. 19 2
967 190.08 humidity 50 90 > th dose dependent rect. 3 12
969 190.09 humidity 50 43200 > th dose independent rect. 19 2
976 190.11 radiation 40 1440 > th dose dependent no NA NA
977 190.11 radiation 40 1440 > th dose dependent rect. 8 8