Os03g0205000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UBA-like domain containing protein.
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Os03g0205000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UBA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.02 | 0.253 | 10.3 | 0.953 | 0.0194 | 1.08 | -0.204 | 1.2 | 0.2 | 6.38 | 0.39 | 1444 | -- | -- |
| 29.58 | 0.253 | 10.3 | 1.05 | 0.00892 | 0.781 | -0.23 | -- | 0.193 | 6.18 | 0.5275 | 1447 | -- | -- |
| 29.09 | 0.251 | 10.3 | 0.95 | 0.0208 | 1.1 | -- | 1.25 | 0.201 | 9.6 | 0.3604 | 1448 | -- | -- |
| 29.6 | 0.253 | 10.2 | 1.03 | 0.015 | 0.787 | -- | -- | 0.212 | 8.81 | 0.5282 | 1447 | -- | -- |
| 29.13 | 0.251 | 10.3 | 0.951 | -- | 1.09 | -- | 1.23 | 0.2 | -- | 0.36 | 1444 | -- | -- |
| 36.25 | 0.282 | 10.3 | 0.855 | 0.00749 | -- | -0.255 | -- | 0.118 | 5.03 | -- | -- | -- | -- |
| 36.41 | 0.283 | 10.3 | 0.856 | 0.0103 | -- | -- | -- | 0.12 | 8.54 | -- | -- | -- | -- |
| 29.62 | 0.253 | 10.2 | 1.06 | -- | 0.79 | -- | -- | 0.218 | -- | 0.53 | 1445 | -- | -- |
| 54.24 | 0.343 | 10.3 | -- | 0.00518 | 0.24 | -- | -- | 0.0903 | 8.35 | 10 | 2841 | -- | -- |
| 36.41 | 0.282 | 10.3 | 0.856 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 55.71 | 0.349 | 10.3 | -- | 0.0214 | -- | -- | -- | 0.0243 | 5.14 | -- | -- | -- | -- |
| 53.38 | 0.34 | 10.3 | -- | -- | 0.291 | -- | -- | 0.116 | -- | 10 | 8647 | -- | -- |
| 55.73 | 0.348 | 10.3 | -- | -- | -- | -- | -- | 0.0247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 5 | 27.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 8 | 27.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 56 | 28.08 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 57 | 28.10 | radiation | 1 | 1440 | < th | dose dependent | sin | 18 | NA |
| 72 | 28.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 82 | 28.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 91 | 28.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 97 | 28.30 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 109 | 28.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 110 | 28.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 217 | 28.49 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 244 | 28.53 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 392 | 28.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 407 | 29.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 433 | 29.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 484 | 29.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 493 | 29.17 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 514 | 29.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 519 | 29.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 573 | 29.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 608 | 29.39 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 661 | 29.46 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 679 | 29.49 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 15 |
| 686 | 29.50 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 689 | 29.50 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 694 | 29.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 698 | 29.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 756 | 29.53 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 782 | 29.55 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 815 | 29.59 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 828 | 29.60 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 876 | 29.65 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 883 | 29.65 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 907 | 29.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 931 | 29.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 970 | 29.75 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |