Os03g0204900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TATA-binding protein associated factor 2N (RNA-binding protein 56) (TAFII68) (TAF(II)68).
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Os03g0204900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TATA-binding protein associated factor 2N (RNA-binding protein 56) (TAFII68) (TAF(II)68).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.25 | 0.651 | 5.54 | 3.05 | 0.699 | -1.43 | 0.685 | 5.73 | 0.827 | 10.2 | 25.6 | 5238 | -- | -- |
| 189.28 | 0.641 | 5.66 | 2.84 | 0.827 | -1.95 | 0.0563 | -- | 0.89 | 10.4 | 19.89 | 21656 | -- | -- |
| 194.02 | 0.649 | 5.54 | 3.05 | 0.691 | -1.44 | -- | 5.63 | 0.823 | 10.4 | 25.59 | 5242 | -- | -- |
| 188.45 | 0.639 | 5.64 | 3.11 | 0.788 | -2.13 | -- | -- | 0.918 | 10.8 | 19.4 | 22968 | -- | -- |
| 222.82 | 0.695 | 5.56 | 3.12 | -- | -1.54 | -- | 5.76 | 0.834 | -- | 25.6 | 5217 | -- | -- |
| 250.35 | 0.742 | 5.81 | 0.945 | 0.819 | -- | 0.472 | -- | 0.158 | 10.4 | -- | -- | -- | -- |
| 251.21 | 0.742 | 5.81 | 0.965 | 0.815 | -- | -- | -- | 0.16 | 10.6 | -- | -- | -- | -- |
| 224.56 | 0.698 | 5.65 | 3.13 | -- | -2.24 | -- | -- | 0.948 | -- | 19.7 | 22668 | -- | -- |
| 257.04 | 0.747 | 5.79 | -- | 0.727 | -0.718 | -- | -- | 0.278 | 10.7 | 25.58 | 1851 | -- | -- |
| 292.01 | 0.798 | 5.83 | 0.95 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 275.76 | 0.777 | 5.84 | -- | 0.809 | -- | -- | -- | 0.0526 | 10.5 | -- | -- | -- | -- |
| 284.29 | 0.785 | 5.8 | -- | -- | -0.921 | -- | -- | 0.311 | -- | 25.51 | 2077 | -- | -- |
| 315.83 | 0.83 | 5.86 | -- | -- | -- | -- | -- | 0.051 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.60 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 184.61 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 3 | 184.65 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 4 | 184.70 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 9 | 184.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 16 | 184.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 17 | 184.91 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 21 | 184.93 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 150 | 185.63 | temperature | 20 | 14400 | < th | dose independent | sin | 9 | NA |
| 162 | 185.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 168 | 185.80 | temperature | 20 | 14400 | > th | dose independent | sin | 9 | NA |
| 213 | 186.15 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 391 | 187.81 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 427 | 188.09 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 434 | 188.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 496 | 188.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 516 | 188.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 524 | 188.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 613 | 189.12 | temperature | 15 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 614 | 189.13 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 640 | 189.24 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 651 | 189.27 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 668 | 189.33 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 678 | 189.35 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 726 | 189.46 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 751 | 189.54 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 757 | 189.55 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 790 | 189.62 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 837 | 189.72 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 873 | 189.82 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 874 | 189.82 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 890 | 189.86 | temperature | 25 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 902 | 189.88 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 961 | 189.97 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 973 | 189.99 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 985 | 190.02 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 1000 | 190.04 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 5 |