Os03g0201600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding protein, YrdC family protein.
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Os03g0201600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding protein, YrdC family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.46 | 0.337 | 11.1 | -0.123 | 1.12 | 0.616 | -0.357 | -5.53 | 0.00714 | 17.5 | 26.15 | 2866 | -- | -- |
| 56.74 | 0.354 | 11 | 1.25 | 1.06 | 0.428 | -0.443 | -- | 0.234 | 17.9 | 17.3 | 7879 | -- | -- |
| 51.74 | 0.335 | 11.1 | -0.18 | 1.11 | 0.66 | -- | -5.9 | 0.00978 | 17.5 | 26.51 | 2841 | -- | -- |
| 56.96 | 0.352 | 11 | 1.24 | 1.04 | 0.499 | -- | -- | 0.23 | 17.9 | 7.507 | 55 | -- | -- |
| 89.9 | 0.442 | 11 | 0.517 | -- | 1.36 | -- | -4.02 | -0.0408 | -- | 23.81 | 349 | -- | -- |
| 59.03 | 0.36 | 11 | 1.34 | 1.14 | -- | -0.339 | -- | 0.302 | 17.6 | -- | -- | -- | -- |
| 59.31 | 0.361 | 11 | 1.34 | 1.14 | -- | -- | -- | 0.3 | 17.6 | -- | -- | -- | -- |
| 95.79 | 0.456 | 11 | 1.13 | -- | 1.05 | -- | -- | 0.165 | -- | 24.1 | 267 | -- | -- |
| 93.91 | 0.451 | 11 | -- | 0.889 | 0.955 | -- | -- | 0.0556 | 18.1 | 14.7 | 100 | -- | -- |
| 127.11 | 0.527 | 10.9 | 1.3 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 106.77 | 0.483 | 11 | -- | 1.12 | -- | -- | -- | 0.151 | 17.6 | -- | -- | -- | -- |
| 123.33 | 0.517 | 11 | -- | -- | 1.74 | -- | -- | -0.0675 | -- | 9.421 | 271 | -- | -- |
| 172 | 0.612 | 11 | -- | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 4 | 51.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 10 |
| 16 | 51.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 14 |
| 19 | 51.80 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 27 | 51.88 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 38 | 51.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 39 | 51.93 | humidity | 70 | 43200 | < th | dose dependent | sin | 6 | NA |
| 50 | 51.98 | temperature | 15 | 720 | > th | dose independent | rect. | 24 | 10 |
| 58 | 52.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 74 | 52.06 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 77 | 52.07 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 82 | 52.08 | humidity | 90 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 87 | 52.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 89 | 52.09 | humidity | 90 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 101 | 52.10 | humidity | 70 | 43200 | < th | dose dependent | sin | 10 | NA |
| 114 | 52.11 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 133 | 52.13 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 165 | 52.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 174 | 52.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 184 | 52.17 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 224 | 52.20 | humidity | 70 | 43200 | < th | dose dependent | no | NA | NA |
| 226 | 52.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 234 | 52.20 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 241 | 52.21 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 243 | 52.21 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 244 | 52.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 267 | 52.22 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 291 | 52.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 299 | 52.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 315 | 52.24 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 329 | 52.25 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 338 | 52.25 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 19 |
| 349 | 52.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 358 | 52.27 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 9 | 12 |
| 376 | 52.28 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 394 | 52.29 | humidity | 60 | 43200 | < th | dose dependent | sin | 13 | NA |
| 412 | 52.30 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 16 |
| 425 | 52.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 453 | 52.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 475 | 52.34 | humidity | 50 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 495 | 52.35 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 499 | 52.35 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 513 | 52.36 | temperature | 15 | 720 | > th | dose independent | rect. | 22 | 14 |
| 538 | 52.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 559 | 52.38 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 578 | 52.40 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 585 | 52.40 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 601 | 52.41 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 671 | 52.44 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 850 | 52.50 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 851 | 52.50 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 889 | 52.51 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |