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Os03g0201300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 17.2 (0.0157) R2 : 0.787
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.27 (0.0402) R2dC : 0.465 R2C : 0.383
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.854 (0.033) R2dN8 : 0.405 R2N8 : 0.322
σ : 0.295
deviance : 39.86
__
_____
C
peak time of C : 19.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.65 0.277 17.2 0.167 1.18 0.423 0.51 -0.335 -0.886 20.5 21.04 351 -- --
34.85 0.275 17.2 0.177 1.18 0.417 0.534 -- -0.882 20.5 21.05 350 -- --
35.48 0.277 17.2 0.164 1.18 0.428 -- -0.395 -0.886 20.5 21.04 348 -- --
35.74 0.278 17.2 0.174 1.18 0.415 -- -- -0.877 20.5 21.94 346 -- --
52.93 0.339 17.1 0.035 -- 1.36 -- 0.597 -0.715 -- 0.1321 866 -- --
37.81 0.288 17.2 0.227 1.27 -- 0.548 -- -0.831 19.8 -- -- -- --
38.67 0.291 17.2 0.213 1.27 -- -- -- -0.83 19.7 -- -- -- --
46.3 0.317 17.1 0.152 -- 1.77 -- -- -0.821 -- 1.41 935 -- --
36.5 0.281 17.2 -- 1.18 0.418 -- -- -0.89 20.5 21.93 348 -- --
125.42 0.523 17.2 0.197 -- -- -- -- -0.849 -- -- -- -- --
39.86 0.295 17.2 -- 1.27 -- -- -- -0.854 19.8 -- -- -- --
43.13 0.306 17.2 -- -- 1.79 -- -- -0.933 -- 0.5701 958 -- --
126.44 0.525 17.2 -- -- -- -- -- -0.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.84 temperature 25 720 > th dose independent rect. 21 9
3 32.95 atmosphere 1005 270 > th dose dependent rect. 22 10
5 33.06 temperature 25 720 > th dose dependent rect. 21 9
7 33.08 temperature 25 720 > th dose dependent rect. 21 5
10 33.10 temperature 25 270 > th dose independent rect. 24 7
11 33.10 atmosphere 1005 90 > th dose dependent sin 8 NA
19 33.16 atmosphere 1005 720 > th dose dependent rect. 19 7
24 33.20 atmosphere 1010 270 < th dose dependent rect. 23 5
29 33.25 temperature 25 270 < th dose independent rect. 24 2
32 33.27 temperature 25 720 > th dose independent rect. 24 5
39 33.35 atmosphere 995 30 > th dose dependent rect. 4 8
55 33.44 temperature 25 720 > th dose dependent rect. 24 1
61 33.49 temperature 25 720 > th dose dependent rect. 21 1
84 33.56 atmosphere 1010 270 < th dose dependent rect. 23 8
98 33.61 temperature 25 10 > th dose independent rect. 24 7
104 33.63 temperature 25 10 > th dose independent rect. 22 9
113 33.68 temperature 25 720 < th dose independent rect. 22 8
114 33.68 temperature 25 10 > th dose independent rect. 19 12
121 33.70 temperature 25 10 > th dose independent sin 8 NA
125 33.71 temperature 25 30 < th dose independent rect. 24 6
132 33.72 atmosphere 1000 30 > th dose dependent rect. 19 17
167 33.81 atmosphere 1010 270 < th dose dependent rect. 1 1
168 33.81 atmosphere 1010 90 < th dose dependent rect. 1 8
194 33.86 atmosphere 1000 30 > th dose dependent rect. 12 7
196 33.87 humidity 90 90 > th dose independent rect. 1 3
213 33.91 temperature 25 720 > th dose independent rect. 7 1
215 33.91 atmosphere 1005 720 > th dose dependent rect. 21 1
219 33.92 temperature 30 90 < th dose independent rect. 4 8
220 33.92 atmosphere 1005 720 > th dose independent rect. 17 10
223 33.93 atmosphere 1005 720 > th dose independent rect. 19 8
227 33.95 temperature 30 270 > th dose independent rect. 12 2
236 33.97 temperature 20 30 > th dose independent rect. 3 1
256 33.99 atmosphere 1005 720 > th dose independent rect. 17 12
267 34.00 atmosphere 995 30 > th dose dependent rect. 4 10
276 34.02 temperature 25 720 > th dose independent rect. 7 4
309 34.07 atmosphere 1005 10 > th dose dependent rect. 22 14
311 34.08 wind 9 1440 < th dose independent rect. 2 3
312 34.08 temperature 10 1440 > th dose independent rect. 2 3
316 34.08 temperature 30 1440 < th dose independent rect. 2 3
320 34.08 humidity 50 1440 > th dose independent rect. 2 3
329 34.08 atmosphere 995 1440 > th dose independent rect. 2 3
330 34.08 radiation 20 1440 < th dose independent rect. 2 3
343 34.08 temperature 10 1440 > th dose independent rect. 5 21
351 34.09 temperature 20 30 > th dose independent rect. 12 16
358 34.10 temperature 25 1440 < th dose independent rect. 4 1
372 34.12 temperature 25 10 > th dose independent rect. 19 14
375 34.12 temperature 30 270 < th dose dependent rect. 4 8
381 34.12 radiation 40 270 < th dose dependent rect. 2 22
386 34.13 radiation 40 90 < th dose independent rect. 4 21
407 34.16 atmosphere 1005 10 > th dose dependent rect. 14 5
415 34.16 radiation 40 270 < th dose dependent rect. 4 19
426 34.18 temperature 25 720 > th dose independent rect. 7 6
429 34.18 temperature 10 1440 > th dose independent rect. 5 8
432 34.18 atmosphere 995 1440 > th dose independent rect. 5 8
434 34.18 temperature 10 1440 > th dose independent rect. 13 16
441 34.19 humidity 80 30 > th dose dependent rect. 1 3
444 34.19 atmosphere 1015 30 < th dose dependent rect. 1 14
449 34.20 radiation 40 270 > th dose independent rect. 12 22
463 34.22 temperature 20 30 > th dose independent rect. 1 3
483 34.24 temperature 25 720 > th dose dependent rect. 7 4
493 34.25 temperature 20 720 > th dose dependent rect. 7 1
507 34.26 temperature 25 720 > th dose independent rect. 21 1
509 34.26 humidity 80 4320 > th dose independent rect. 20 5
511 34.26 atmosphere 1005 270 > th dose independent rect. 19 14
524 34.27 radiation 40 270 < th dose independent rect. 2 22
530 34.27 atmosphere 1005 10 > th dose dependent rect. 24 9
537 34.28 atmosphere 1005 30 > th dose independent rect. 12 7
539 34.28 temperature 15 30 > th dose dependent rect. 3 1
544 34.29 atmosphere 1015 30 < th dose independent rect. 12 16
556 34.30 humidity 90 10 > th dose independent rect. 24 7
566 34.31 humidity 50 30 > th dose independent rect. 1 16
592 34.33 humidity 90 10 > th dose dependent rect. 24 7
615 34.35 radiation 20 270 < th dose independent rect. 4 19
627 34.36 temperature 25 270 > th dose dependent rect. 2 3
635 34.37 wind 3 30 < th dose dependent rect. 3 1
651 34.38 atmosphere 1005 720 > th dose dependent sin 14 NA
657 34.38 temperature 10 30 > th dose dependent rect. 12 16
659 34.38 atmosphere 1015 30 < th dose dependent rect. 1 16
664 34.39 atmosphere 1005 720 > th dose independent rect. 21 4
690 34.41 wind 1 270 < th dose independent rect. 24 1
691 34.41 radiation 40 270 > th dose independent rect. 12 2
709 34.42 atmosphere 995 30 > th dose independent rect. 12 16
721 34.43 atmosphere 995 30 > th dose independent rect. 1 16
724 34.43 temperature 25 270 > th dose dependent rect. 4 1
750 34.44 temperature 25 270 > th dose dependent rect. 7 8
766 34.46 radiation 30 270 > th dose independent rect. 14 1
769 34.46 wind 9 30 < th dose independent rect. 1 16
782 34.46 temperature 10 30 > th dose dependent rect. 1 16
790 34.47 atmosphere 1005 270 < th dose independent rect. 23 6
791 34.47 radiation 30 270 < th dose independent rect. 13 10
806 34.48 atmosphere 1005 270 < th dose independent rect. 24 4
811 34.48 temperature 10 30 > th dose dependent rect. 1 3
823 34.49 atmosphere 1000 30 > th dose independent rect. 4 8
841 34.50 radiation 40 270 < th dose independent rect. 3 11
885 34.52 temperature 25 10 > th dose independent rect. 4 3
901 34.52 radiation 40 270 < th dose dependent rect. 4 8
904 34.52 temperature 10 270 > th dose dependent rect. 23 16
921 34.53 radiation 40 270 < th dose dependent rect. 13 10
926 34.53 temperature 30 270 < th dose dependent rect. 4 19
931 34.54 radiation 40 90 < th dose independent rect. 4 9
940 34.54 temperature 25 270 > th dose dependent rect. 9 6