Os03g0201100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclophilin-like protein PPIL3b.
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Os03g0201100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclophilin-like protein PPIL3b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 | 0.156 | 11 | -0.292 | 0.372 | -0.427 | 0.0961 | -0.336 | 0.102 | 12 | 1.41 | 91 | -- | -- |
| 11.1 | 0.155 | 11 | -0.286 | 0.358 | -0.41 | -0.0758 | -- | 0.104 | 12 | 1.368 | 91 | -- | -- |
| 10.92 | 0.154 | 11 | -0.293 | 0.355 | -0.411 | -- | -0.235 | 0.0951 | 11.6 | 3.22 | 49 | -- | -- |
| 11.01 | 0.155 | 11 | -0.298 | 0.368 | -0.423 | -- | -- | 0.093 | 11.7 | 1.783 | 48 | -- | -- |
| 14.09 | 0.176 | 11 | -0.303 | -- | -0.168 | -- | -0.0883 | 0.0772 | -- | 35 | 49 | -- | -- |
| 13.2 | 0.17 | 11 | -0.295 | 0.147 | -- | -0.0485 | -- | 0.0814 | 10.8 | -- | -- | -- | -- |
| 13.21 | 0.17 | 11 | -0.297 | 0.147 | -- | -- | -- | 0.0812 | 10.7 | -- | -- | -- | -- |
| 14.1 | 0.176 | 11 | -0.304 | -- | -0.164 | -- | -- | 0.0768 | -- | 35 | 49 | -- | -- |
| 13.35 | 0.17 | 11 | -- | 0.374 | -0.423 | -- | -- | 0.126 | 11.8 | 1.422 | 48 | -- | -- |
| 14.54 | 0.178 | 11 | -0.3 | -- | -- | -- | -- | 0.0804 | -- | -- | -- | -- | -- |
| 15.53 | 0.184 | 11 | -- | 0.149 | -- | -- | -- | 0.114 | 10.8 | -- | -- | -- | -- |
| 15.18 | 0.181 | 11 | -- | -- | -0.224 | -- | -- | 0.163 | -- | 20 | 973 | -- | -- |
| 16.92 | 0.192 | 11 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.20 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 3 | 10.27 | humidity | 60 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 7 | 10.39 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 24 | 10.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 29 | 10.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 31 | 10.64 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 51 | 10.71 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 14 |
| 61 | 10.73 | humidity | 60 | 10 | > th | dose dependent | sin | 1 | NA |
| 81 | 10.75 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 21 |
| 104 | 10.79 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 114 | 10.80 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 14 |
| 115 | 10.80 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 14 |
| 121 | 10.80 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 125 | 10.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 161 | 10.85 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 14 |
| 197 | 10.88 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 221 | 10.89 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 234 | 10.91 | radiation | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 250 | 10.92 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 268 | 10.93 | humidity | 60 | 90 | > th | dose independent | rect. | 4 | 14 |
| 269 | 10.93 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 14 |
| 286 | 10.94 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 312 | 10.95 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 325 | 10.95 | humidity | 90 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 329 | 10.95 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 352 | 10.97 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 14 |
| 354 | 10.97 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 422 | 10.99 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 427 | 11.00 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 15 |
| 430 | 11.00 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 431 | 11.00 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 435 | 11.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 437 | 11.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 531 | 11.02 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 21 |
| 563 | 11.04 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 22 |
| 590 | 11.05 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 592 | 11.05 | humidity | 90 | 30 | < th | dose dependent | sin | 2 | NA |
| 631 | 11.07 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 9 |
| 710 | 11.09 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 22 |
| 774 | 11.11 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 831 | 11.11 | humidity | 50 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 887 | 11.11 | humidity | 60 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 931 | 11.12 | humidity | 60 | 90 | > th | dose dependent | rect. | 11 | 21 |
| 937 | 11.12 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 940 | 11.13 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 946 | 11.13 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |